Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa014719m |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 45937.4 Isoelectric Point: 8.0141 |
Chromosome | Chromosome/Scaffold: 6 Start: 25836014 End: 25838465 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 375 | 0 |
TACQTEDSEVLVPKGHTFMIQSTIFTGPCKPGLKMQIDGTLMPPDGPDSWPRNNSKRQWLVFYRINEMSMQGTGVIDGRGEKWWNLPCKPHKGFTGTTQP GPCDSPVAIRFFMSSNLSVIGLKVKNSPQFHFRFDNCQNVYIESLNIKTPALSPNTDGIHIENTNNVKLYNSVISNGDDCVSIGAGCYNVEIRNITCGPS HGISIGSLGIRNSRACVSNITVKDSIIKHSDNGVRIKTWQGGSGSVSRVTFQNIHMDTVRNPILLDQYYCLTKKCPNQTSAVHISDILYSKIKGTYDVRS PPMHFACSDSMPCTNLTLSEVELLPA |
Full Sequence |
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Protein Sequence Length: 420 Download |
MSRISLPPSP APEAVSPSYN PTTIFNVRSY GAIGDGVTDD TQAFKLAWDT ACQTEDSEVL 60 VPKGHTFMIQ STIFTGPCKP GLKMQIDGTL MPPDGPDSWP RNNSKRQWLV FYRINEMSMQ 120 GTGVIDGRGE KWWNLPCKPH KGFTGTTQPG PCDSPVAIRF FMSSNLSVIG LKVKNSPQFH 180 FRFDNCQNVY IESLNIKTPA LSPNTDGIHI ENTNNVKLYN SVISNGDDCV SIGAGCYNVE 240 IRNITCGPSH GISIGSLGIR NSRACVSNIT VKDSIIKHSD NGVRIKTWQG GSGSVSRVTF 300 QNIHMDTVRN PILLDQYYCL TKKCPNQTSA VHISDILYSK IKGTYDVRSP PMHFACSDSM 360 PCTNLTLSEV ELLPAQGKFV SNPICWSAYG TVQTLTIPPV FCLLGGTPEM LPQNGKERC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-78 | 19 | 399 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-80 | 19 | 411 | 400 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 57 | 385 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-104 | 21 | 372 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-124 | 24 | 399 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 18 | 419 | 82 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 419 | 41 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 18 | 419 | 36 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 24 | 410 | 21 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 419 | 26 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-24 | 57 | 372 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-24 | 57 | 372 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-24 | 57 | 372 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-24 | 57 | 372 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-24 | 57 | 372 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 321 | 32 | 352 | 0 |
DR450143 | 293 | 69 | 361 | 0 |
DY277859 | 411 | 24 | 417 | 0 |
ES849368 | 296 | 70 | 363 | 0 |
GR169315 | 262 | 106 | 367 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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