Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa014982m |
Family | GH28 |
Protein Properties | Length: 449 Molecular Weight: 48850.9 Isoelectric Point: 8.4491 |
Chromosome | Chromosome/Scaffold: 3 Start: 5204560 End: 5207319 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 415 | 0 |
ACSLPMRMRIVIPVGSTYLVHPLDIAGPCRSKVTLMISGNIVAPKDPDAWIGLNPRKWLYFHGVNHLTLEGGGRINGMGQEWWARSCKTNSTNPCRHAPT AVTFHRCKNLKVKDLMIVNSQQMHMAFTNCMRVVASNLRVMAPAVSPNTDGIHISASRGVEVKNSIIRTGDDCISIVSNSSRIRIINIACGPGHGISIGS LGKSNSWSHVHDVLVDVALLSNTDNGVRIKTWQGGSGFASNIAFRNVLMDNVSNPIIIDQYYCDSWLPCLNQSSAVKVENISFVHVKGTSATEEAISFAC SDDSPCEGLYLEDIQLQSSIGGITRSLCWEAQG |
Full Sequence |
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Protein Sequence Length: 449 Download |
MRSIRSCPTA SKCLIVLIHM LFLLVSSNTA NGENFDSFLQ LPQSGSTRTR PKSKRVLFVG 60 DFGAKGDGIT DDSKAFKNAW EIACSLPMRM RIVIPVGSTY LVHPLDIAGP CRSKVTLMIS 120 GNIVAPKDPD AWIGLNPRKW LYFHGVNHLT LEGGGRINGM GQEWWARSCK TNSTNPCRHA 180 PTAVTFHRCK NLKVKDLMIV NSQQMHMAFT NCMRVVASNL RVMAPAVSPN TDGIHISASR 240 GVEVKNSIIR TGDDCISIVS NSSRIRIINI ACGPGHGISI GSLGKSNSWS HVHDVLVDVA 300 LLSNTDNGVR IKTWQGGSGF ASNIAFRNVL MDNVSNPIII DQYYCDSWLP CLNQSSAVKV 360 ENISFVHVKG TSATEEAISF ACSDDSPCEG LYLEDIQLQS SIGGITRSLC WEAQGSSSGS 420 VDPPACFSSF LSSENFMKQK VNPQTIHSQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-82 | 56 | 428 | 374 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-86 | 18 | 426 | 412 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-89 | 84 | 410 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-110 | 46 | 423 | 380 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 6 | 441 | 436 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 33 | 441 | 33 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 1 | 440 | 1 | 435 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 13 | 442 | 14 | 433 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 441 | 1 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 34 | 446 | 11 | 421 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 143 | 344 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 149 | 410 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 149 | 410 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 149 | 410 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 149 | 410 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |