Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa015208m |
Family | GH28 |
Protein Properties | Length: 377 Molecular Weight: 40055.5 Isoelectric Point: 8.4901 |
Chromosome | Chromosome/Scaffold: 1 Start: 9800954 End: 9802609 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 33 | 363 | 0 |
ACRNHTGRSRVVIPKGTFKTGPVIFQGPCSCSKPIVVQVSGTIKGLNDISLYEEPFWFLFEHVEGLVLTGNGVFDGQGSSSWKNIDGCSSCSPLPASIKF NGVKNGVIRGITSLNSKGVHVFLTNSQNIRVRGVNISAPDTSPNTDGIHISNSNNIKIARVHIGTGDDCIGMIQGSTNVAINNVVCGPGHGISIGSLGKY QNENDVTGIIVKKTTFLNTDNGIRIKSWPGSTPSRASGMIFQDLIMQNVKKPIIIDQEYCAGGCNKNQPSRVQISNVHYINIKGTTASKIAVDFICSSQF PCKNVELRDINLNYIGPSNGGPITSICKNAE |
Full Sequence |
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Protein Sequence Length: 377 Download |
DPTEKIFNVL DHGAKPDGSG DSSIAFIQTW IAACRNHTGR SRVVIPKGTF KTGPVIFQGP 60 CSCSKPIVVQ VSGTIKGLND ISLYEEPFWF LFEHVEGLVL TGNGVFDGQG SSSWKNIDGC 120 SSCSPLPASI KFNGVKNGVI RGITSLNSKG VHVFLTNSQN IRVRGVNISA PDTSPNTDGI 180 HISNSNNIKI ARVHIGTGDD CIGMIQGSTN VAINNVVCGP GHGISIGSLG KYQNENDVTG 240 IIVKKTTFLN TDNGIRIKSW PGSTPSRASG MIFQDLIMQN VKKPIIIDQE YCAGGCNKNQ 300 PSRVQISNVH YINIKGTTAS KIAVDFICSS QFPCKNVELR DINLNYIGPS NGGPITSICK 360 NAEVGFGGIQ NPPACH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-78 | 3 | 372 | 377 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 9.0e-85 | 6 | 375 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 41 | 365 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-88 | 3 | 375 | 382 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-120 | 6 | 376 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 2 | 368 | 51 | 419 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 6 | 346 | 489 | 835 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 2 | 376 | 51 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314372.1 | 0 | 1 | 376 | 43 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 1 | 376 | 41 | 408 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 6e-18 | 176 | 334 | 165 | 321 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 7e-18 | 49 | 367 | 4 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-18 | 49 | 367 | 4 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-18 | 49 | 367 | 4 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-18 | 49 | 367 | 4 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW871492 | 175 | 1 | 175 | 0 |
CN993443 | 176 | 202 | 377 | 0 |
EE107069 | 252 | 15 | 263 | 0 |
GR450321 | 284 | 67 | 347 | 0 |
GR455314 | 268 | 84 | 348 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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