Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa015568m |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 50570.9 Isoelectric Point: 6.7632 |
Chromosome | Chromosome/Scaffold: 8 Start: 21445560 End: 21447373 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 468 | 0 |
SGPATVLIPKGTFMTGPVIFQGPCTSSKEPILVEVEGYVKASTDLSLYASPEWFTFEMIDGLIVTGEGTFDGQGESTWKSNGCQDKSSCAQAPSSLKFNH VNNTLVERITSLNSKFFHAHIYGCTNLTMNNVHITAPGDSPNTDGVHTSTSTNVKVLNSVIATGDDCVSIGQGSNDILVNNVTCGPGHGISVGSLGKRKD DKSVSQIHVSNCTLRNTTNGARIKTWAAESAGEASDITYENIVMDQVQIPIVIDQNYGQKKPKAGTGPAGGPPSKWKISNVHFRNIRGTSSRNIAVSLQC SSSNPCDGIEMADINFSYLGGAVKDTSLTTECYNA |
Full Sequence |
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Protein Sequence Length: 483 Download |
MSMGNMAIAK RSSAKAIILL GLALLSCVAD GVSRGHLFKA SARRSVAVIN RKVFDVTTFG 60 AKTENQMPGG KSTAAGVKLG VKLDLPSLPG DDEKVDSSEE EAGPGEAGPG ESPSDDNASA 120 FIKTWVAACR GNYSGPATVL IPKGTFMTGP VIFQGPCTSS KEPILVEVEG YVKASTDLSL 180 YASPEWFTFE MIDGLIVTGE GTFDGQGEST WKSNGCQDKS SCAQAPSSLK FNHVNNTLVE 240 RITSLNSKFF HAHIYGCTNL TMNNVHITAP GDSPNTDGVH TSTSTNVKVL NSVIATGDDC 300 VSIGQGSNDI LVNNVTCGPG HGISVGSLGK RKDDKSVSQI HVSNCTLRNT TNGARIKTWA 360 AESAGEASDI TYENIVMDQV QIPIVIDQNY GQKKPKAGTG PAGGPPSKWK ISNVHFRNIR 420 GTSSRNIAVS LQCSSSNPCD GIEMADINFS YLGGAVKDTS LTTECYNAKI APAGVQIPPL 480 CP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-71 | 116 | 478 | 368 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 4.0e-72 | 116 | 467 | 368 | + polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-74 | 116 | 481 | 367 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-88 | 136 | 451 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-113 | 115 | 482 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 6 | 481 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 116 | 481 | 70 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 120 | 481 | 3 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 14 | 481 | 4 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 120 | 449 | 1 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-19 | 187 | 422 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 187 | 422 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 187 | 422 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 187 | 422 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-19 | 187 | 422 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |