Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa015678m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41345.6 Isoelectric Point: 6.8124 |
Chromosome | Chromosome/Scaffold: 1 Start: 39123450 End: 39126162 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 378 | 0 |
DDVPTLTVPGGKTFLLQPSEFEGPCKSKSVHIQVSGNLMAPKTPDAWKVCPSYSWLSFRNVDNLILDGSGKIDGQGSAWWSKALQFHRCDHLRLSGLTHI NSPRSHIGIGTSNDVDISHLTIIAPDESPNTDGINVANSTYVYIHDSKIGTGDDCIAISSGASNVRIAKIACGPGHGISVGSLGANGAYAAVENVYVRDC SFNGTQNGARIKTWPGGSGYARNITFENITLTATKNPIIIDQQYCNGAHDCAKQSKAVLVSNVRFTDFRGTCGNEEAIKLDCNHISGCQNIELVKINITS TVPSKKVYASCNNAKGN |
Full Sequence |
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Protein Sequence Length: 391 Download |
MQDILISFFI FCIASSQLLG IVYSKTTFDV VKFGAVGDGQ TDDSEAIVNA WKALCGAAAA 60 GDDVPTLTVP GGKTFLLQPS EFEGPCKSKS VHIQVSGNLM APKTPDAWKV CPSYSWLSFR 120 NVDNLILDGS GKIDGQGSAW WSKALQFHRC DHLRLSGLTH INSPRSHIGI GTSNDVDISH 180 LTIIAPDESP NTDGINVANS TYVYIHDSKI GTGDDCIAIS SGASNVRIAK IACGPGHGIS 240 VGSLGANGAY AAVENVYVRD CSFNGTQNGA RIKTWPGGSG YARNITFENI TLTATKNPII 300 IDQQYCNGAH DCAKQSKAVL VSNVRFTDFR GTCGNEEAIK LDCNHISGCQ NIELVKINIT 360 STVPSKKVYA SCNNAKGNSG STVPTVSCLE * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-84 | 24 | 387 | 382 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 66 | 376 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-102 | 24 | 389 | 381 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-115 | 18 | 390 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-129 | 4 | 382 | 379 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 27 | 389 | 29 | 396 | PGN [Glycine max] |
RefSeq | XP_002266797.1 | 0 | 26 | 389 | 16 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 389 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 389 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515527.1 | 0 | 4 | 390 | 5 | 358 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 133 | 332 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 133 | 332 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 133 | 332 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 133 | 332 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 133 | 332 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |