Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa015822m |
Family | GH28 |
Protein Properties | Length: 380 Molecular Weight: 40233.4 Isoelectric Point: 7.4427 |
Chromosome | Chromosome/Scaffold: 1 Start: 39117673 End: 39119969 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 41 | 360 | 0 |
PTLTIPGGKTFLLQPSEFEGPCKSKSVHVQVSGNLVAPKTPDAWKVCPPHSWLVFRKVDNLIIDGSGKIDGQGSAWWGEDSSLINALHFLRCDHLRLSGL THINSPRSHIGISTSNDVEISHLTIIAPDESPNTDGINVTNSTYVNIHDSKIGTGDDCITIMSGSSNVRIAKIACGPGHGISVGSLGADGAYAAVENIYV RDCSFIGTQNGARIKTWPGGSGYARNITFENIILTAAKNPIIIDQQYCNGAHNCPKKSKAVLVSNVRFTGFRGTSDNEEAIKLDCNHISGCQNIELVKIN ITSTVPSKKVYASCNNAKGN |
Full Sequence |
---|
Protein Sequence Length: 380 Download |
KTTFDVVKFG AVGDGQTDDT EAFVKAWTAL CGAAAGGDDV PTLTIPGGKT FLLQPSEFEG 60 PCKSKSVHVQ VSGNLVAPKT PDAWKVCPPH SWLVFRKVDN LIIDGSGKID GQGSAWWGED 120 SSLINALHFL RCDHLRLSGL THINSPRSHI GISTSNDVEI SHLTIIAPDE SPNTDGINVT 180 NSTYVNIHDS KIGTGDDCIT IMSGSSNVRI AKIACGPGHG ISVGSLGADG AYAAVENIYV 240 RDCSFIGTQN GARIKTWPGG SGYARNITFE NIILTAAKNP IIIDQQYCNG AHNCPKKSKA 300 VLVSNVRFTG FRGTSDNEEA IKLDCNHISG CQNIELVKIN ITSTVPSKKV YASCNNAKGN 360 SGSTVPTVSC LKYPTRPFI* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-88 | 2 | 369 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-90 | 42 | 358 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-105 | 1 | 375 | 386 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-118 | 4 | 378 | 379 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-131 | 4 | 372 | 369 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 2 | 371 | 122 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.00006 | 300 | 378 | 23 | 97 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 2 | 371 | 16 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 371 | 24 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 2 | 371 | 26 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 1e-17 | 109 | 314 | 81 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_B | 2e-17 | 108 | 287 | 83 | 270 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_A | 2e-17 | 108 | 287 | 83 | 270 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ia5_A | 2e-17 | 108 | 287 | 83 | 270 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-17 | 109 | 318 | 80 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CV536748 | 259 | 73 | 325 | 0 |
EL454770 | 275 | 3 | 267 | 0 |
CX192293 | 251 | 43 | 293 | 0 |
DY961682 | 266 | 2 | 257 | 0 |
EY474520 | 246 | 126 | 371 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|