y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa016012m |
Family | PL1 |
Protein Properties | Length: 329 Molecular Weight: 36336.3 Isoelectric Point: 8.7333 |
Chromosome | Chromosome/Scaffold: 4 Start: 964517 End: 965863 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 141 | 254 | 4.79999e-40 |
DATSHVWVDHCFLARSSDGLIDVTHASTAVTITDNYFSQHDKVMLLGHNDNFSADEGMKVTIAFNRFGAGLIERMPRGFGYAHVANNRYDEWKMYAVGGS ANPTIFSEGNYFIA |
Full Sequence |
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Protein Sequence Length: 329 Download |
MASLSRLILL SCFLTYYIAP TSQAYSPGYY TTTTPKTTIN VVDLCLSSNS NWATNRRTLA 60 NWAVGFGQDV DDHVNPQPGS LRYGVIETQR LWIVFAKDMV ITLKNKLIMN SFKTIDGRGA 120 KVEIAYGPCI TVGHRRGCDG DATSHVWVDH CFLARSSDGL IDVTHASTAV TITDNYFSQH 180 DKVMLLGHND NFSADEGMKV TIAFNRFGAG LIERMPRGFG YAHVANNRYD EWKMYAVGGS 240 ANPTIFSEGN YFIAPETAYA KQATKRESRG RWNNWICSKM VLFFVQSGYG SCYPLYSKTQ 300 SFKVLDGSMV PALTSSAGPL RCFVGKAC* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-21 | 145 | 252 | 120 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-45 | 106 | 252 | 185 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-58 | 98 | 255 | 191 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 328 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 328 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 328 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 328 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 21 | 328 | 20 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 40 | 318 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 40 | 318 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000006 | 141 | 254 | 122 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000006 | 141 | 252 | 195 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000006 | 144 | 261 | 213 | 355 | A Chain A, Bacillus Subtilis Pectate Lyase |