| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa016255m |
| Family | PL1 |
| Protein Properties | Length: 396 Molecular Weight: 44236.7 Isoelectric Point: 9.8283 |
| Chromosome | Chromosome/Scaffold: 1 Start: 43645999 End: 43648094 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 113 | 314 | 0 |
| KKWITFQRDMHIRLDKPLLISSFTAIDGRGANVHIAGNACLLVFQASNIIIHGLRIHHCRPQPPSSVMGPEGKIIPIGQVDGDAIRLVTASKVWIDHNTL YECQDGLLDVTRGSTHITISNNWFRDQDKVMLLGHDDGYFRDKNMRVTVVYNHFGPNCNQRMPRIRYGYAHVVNNLYREWSQYAIGGSMNPSVKSEANLF IA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MACHGCPNGN ANIWRFVLCL LIAIAGFAPN PSLAKKTKVD GLKLNVIDGC WRWNSDWRSN 60 RQELALCSVG FSGKMSNNIG RDVIYYQVTD PSDNALDPKP GTLRYGVTMI KGKKWITFQR 120 DMHIRLDKPL LISSFTAIDG RGANVHIAGN ACLLVFQASN IIIHGLRIHH CRPQPPSSVM 180 GPEGKIIPIG QVDGDAIRLV TASKVWIDHN TLYECQDGLL DVTRGSTHIT ISNNWFRDQD 240 KVMLLGHDDG YFRDKNMRVT VVYNHFGPNC NQRMPRIRYG YAHVVNNLYR EWSQYAIGGS 300 MNPSVKSEAN LFIAPKSGNK KEITWRKDSI GDKESWKFYS VGDIFENGAS FVETGAGRAK 360 PNYNREQTFP VVNAKSVRSL TRSSGALICI KRSRC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 107 | 312 | 220 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-58 | 134 | 312 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-67 | 121 | 316 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 75 | 395 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 44 | 395 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 44 | 395 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 44 | 395 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 14 | 321 | 6 | 306 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 45 | 387 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 45 | 387 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 1e-16 | 130 | 312 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-16 | 107 | 314 | 49 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 2e-16 | 137 | 324 | 82 | 258 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
