y
Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa016502m |
Family | GH28 |
Protein Properties | Length: 404 Molecular Weight: 42818.9 Isoelectric Point: 9.1439 |
Chromosome | Chromosome/Scaffold: 7 Start: 22534879 End: 22536564 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 65 | 391 | 0 |
SASGQANAVMYVPKGRFLIKAVVFRGPCKTRRVTVRIDGTLVAPTDYWALGNSGYWILFIKVTGVTVVGGSLDAKGAAFWACRRSGKTCPVGARSITFNW ANNIVITGLTSINSQQTHLVINSCNNVVVRNVKLIAPSESPNTDGIHVQSSAGVTITGSILQTGDDCISIGPGTTNLHISNIKCGPGHGVSIGSLGKELK EDGVQNVTLTNAVFSGSDNGVRIKSWARPSTGFVRNILFQNIIMRNVENPIIIDQNYCPNNQACPNQSSGVKISQVTYRNIQGTSATAEAVTFDCSPSHP CTGIRLQNIKLTYMNRDATSSCKNIDG |
Full Sequence |
---|
Protein Sequence Length: 404 Download |
MAYRNICNCN NYCVVVVVLF MGVLSSNAAA AASNSFNVMK FGAKPDGKTD STQAFVKTWA 60 SACSSASGQA NAVMYVPKGR FLIKAVVFRG PCKTRRVTVR IDGTLVAPTD YWALGNSGYW 120 ILFIKVTGVT VVGGSLDAKG AAFWACRRSG KTCPVGARSI TFNWANNIVI TGLTSINSQQ 180 THLVINSCNN VVVRNVKLIA PSESPNTDGI HVQSSAGVTI TGSILQTGDD CISIGPGTTN 240 LHISNIKCGP GHGVSIGSLG KELKEDGVQN VTLTNAVFSG SDNGVRIKSW ARPSTGFVRN 300 ILFQNIIMRN VENPIIIDQN YCPNNQACPN QSSGVKISQV TYRNIQGTSA TAEAVTFDCS 360 PSHPCTGIRL QNIKLTYMNR DATSSCKNID GTSNGLLVPE SCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-92 | 63 | 389 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-96 | 37 | 400 | 371 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-103 | 36 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-103 | 36 | 403 | 376 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-167 | 36 | 403 | 369 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 14 | 403 | 5 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 15 | 403 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 15 | 403 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 10 | 403 | 3 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 19 | 403 | 13 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 133 | 390 | 124 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-21 | 133 | 389 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-21 | 133 | 389 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-21 | 133 | 389 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-21 | 133 | 389 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |