Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa017135m |
Family | GH28 |
Protein Properties | Length: 293 Molecular Weight: 30662.9 Isoelectric Point: 6.7466 |
Chromosome | Chromosome/Scaffold: 2 Start: 4982354 End: 4983736 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 216 | 0 |
DSTTIYAITAKVVTGVFIIGGALDAKGTALWACKLAGSTDCPNGGATSLSFTNSKNININGLMSLNSQMFHFVINGCQDVRIQGVKVNAAGNSPNTDGIH VQLSTNVAIFNTSIKTGDDCVSIGPGTKDVWIEQIICGPGHGISLGSLAKDLEEEGVQNVTVKNAIFK |
Full Sequence |
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Protein Sequence Length: 293 Download |
MILYILHQSC VAESTLIYNV LSFGAKPNGV IDSTQAFLDA WIAACASSDS TTIYAITAKV 60 VTGVFIIGGA LDAKGTALWA CKLAGSTDCP NGGATSLSFT NSKNININGL MSLNSQMFHF 120 VINGCQDVRI QGVKVNAAGN SPNTDGIHVQ LSTNVAIFNT SIKTGDDCVS IGPGTKDVWI 180 EQIICGPGHG ISLGSLAKDL EEEGVQNVTV KNAIFKAIEH VSGMKINDVV YRNIQRTSAS 240 AIAIKFDCSA TNPCSGIRLE NVSLTFRNQE VQSHCANANG KIVGTAQANS CL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-42 | 19 | 285 | 362 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-42 | 14 | 292 | 376 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-43 | 56 | 265 | 257 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-53 | 14 | 291 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-71 | 14 | 292 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 17 | 292 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 12 | 292 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002263164.1 | 0 | 2 | 292 | 15 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 292 | 15 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 18 | 292 | 23 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.000000002 | 68 | 229 | 77 | 235 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000002 | 68 | 229 | 77 | 235 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000002 | 68 | 229 | 77 | 235 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000002 | 68 | 229 | 77 | 235 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.000000002 | 68 | 229 | 77 | 235 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA927124 | 233 | 21 | 208 | 0 |
JZ191937 | 280 | 61 | 292 | 0 |
EC946744 | 262 | 80 | 293 | 0 |
DT512918 | 267 | 75 | 293 | 0 |
CA926727 | 231 | 26 | 211 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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