y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa017319m |
Family | CE8 |
Protein Properties | Length: 271 Molecular Weight: 29745.5 Isoelectric Point: 6.9323 |
Chromosome | Chromosome/Scaffold: 2 Start: 23796761 End: 23797955 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 51 | 207 | 0 |
KVMKDGSGNFKTLTEAINSIPERNTKRVVVYIGGGVYNEKIKIPQNKPFVTLYGSPNNMPNLTFDGTAQKYGTVYSGTLIVESDYFRAANIIVTPDGIRP DAQAVALQISGDKASFYNCKFFGFQDTLYDYKGLHFFKDCYIQGTVDFIFGKGKSLY |
Full Sequence |
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Protein Sequence Length: 271 Download |
TPAVANDSTP IPADGSQVGS WFDNNVKPLT ERKGTLDAAI VTAEDGPKLI KVMKDGSGNF 60 KTLTEAINSI PERNTKRVVV YIGGGVYNEK IKIPQNKPFV TLYGSPNNMP NLTFDGTAQK 120 YGTVYSGTLI VESDYFRAAN IIVTPDGIRP DAQAVALQIS GDKASFYNCK FFGFQDTLYD 180 YKGLHFFKDC YIQGTVDFIF GKGKSLYLSA SEDNEFSFVH CKITGTTYVR GTYLGRAWGS 240 SPTVVFAYTD MADVVHPERW SDFGHPERSK * 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 2.0e-55 | 48 | 270 | 252 | + pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-58 | 52 | 268 | 253 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-60 | 20 | 270 | 285 | + pectinesterase | ||
PLN02682 | PLN02682 | 7.0e-71 | 50 | 270 | 255 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 4.0e-157 | 1 | 270 | 296 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 6 | 268 | 25 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 1 | 270 | 23 | 317 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 1 | 270 | 19 | 313 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 1 | 268 | 20 | 312 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 1 | 270 | 23 | 315 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-26 | 46 | 260 | 6 | 249 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-22 | 52 | 263 | 7 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-20 | 60 | 207 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-20 | 60 | 207 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-20 | 60 | 207 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275544 | 284 | 11 | 268 | 0 |
DY292200 | 286 | 11 | 270 | 0 |
DY300112 | 286 | 11 | 270 | 0 |
DY300051 | 284 | 11 | 268 | 0 |
DY266986 | 278 | 11 | 262 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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