Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018113m |
Family | GH28 |
Protein Properties | Length: 511 Molecular Weight: 54478 Isoelectric Point: 7.0865 |
Chromosome | Chromosome/Scaffold: 3 Start: 20574939 End: 20577358 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 125 | 464 | 0 |
AAACKVPASTINVPSGSVFLVKPISFSGPNCEANIVFQLDGKIIAPTSSGDWGSGLLQWLEFTKLKGISIKGKGVIDGQGSVWWSDSPTTYNIPADQTYS SSQDTVIESDSGKMPSTKPTALRFYGSDGVSVTGITLQNSPQTHLKFDACTNVQVSDISISSPGDSPNTDGIHLQNSQDVVIFGTSIACGDDCISIQTGC SNIYVHNVNCGPGHGVSIGGLGKDNTRACVSNVTVRDVKMHNTLTGVRIKTWQGGSGSVQNIMFSNIQVSEVATPIMIDQFYCDKSKCQNETSAVAVSGV NYVNIQGTYTTKPVHFACSDSLPCTGVSLDTIQLKSVDEG |
Full Sequence |
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Protein Sequence Length: 511 Download |
MMITFKLRSL TFFVFIAFSI WCSSLLEPCD ARKGGKQYWR QNKGASASAL RKEQKGYGGN 60 HQRHQAGPRV STTPSRGDNY ITPEETAAKL QKNSGGNSNV FNVLDYGAKG DGKADDTKAF 120 ETAWAAACKV PASTINVPSG SVFLVKPISF SGPNCEANIV FQLDGKIIAP TSSGDWGSGL 180 LQWLEFTKLK GISIKGKGVI DGQGSVWWSD SPTTYNIPAD QTYSSSQDTV IESDSGKMPS 240 TKPTALRFYG SDGVSVTGIT LQNSPQTHLK FDACTNVQVS DISISSPGDS PNTDGIHLQN 300 SQDVVIFGTS IACGDDCISI QTGCSNIYVH NVNCGPGHGV SIGGLGKDNT RACVSNVTVR 360 DVKMHNTLTG VRIKTWQGGS GSVQNIMFSN IQVSEVATPI MIDQFYCDKS KCQNETSAVA 420 VSGVNYVNIQ GTYTTKPVHF ACSDSLPCTG VSLDTIQLKS VDEGKQLYGP FCWEAYGELK 480 TSTVPEIDCL KKGKPYSSST GAQSESSDSC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-68 | 97 | 465 | 374 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-68 | 98 | 500 | 410 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-76 | 120 | 459 | 344 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-77 | 132 | 458 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-86 | 100 | 485 | 391 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 3 | 510 | 4 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ABK95830.1 | 0 | 2 | 510 | 4 | 516 | unknown [Populus trichocarpa] |
GenBank | ACU24545.1 | 0 | 3 | 510 | 4 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 1 | 510 | 1 | 510 | polygalacturonase 1 [Prunus persica] |
EMBL | CBI34901.1 | 0 | 22 | 510 | 20 | 483 | unnamed protein product [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 3e-24 | 96 | 477 | 16 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-22 | 194 | 409 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-21 | 192 | 444 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 192 | 444 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 192 | 444 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |