Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018149m |
Family | GH28 |
Protein Properties | Length: 308 Molecular Weight: 33035.6 Isoelectric Point: 7.9334 |
Chromosome | Chromosome/Scaffold: 7 Start: 6625694 End: 6626941 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 295 | 0 |
VPEGRYLLRNAIVFKGDNCKSTDITFRIDGTLIASSDYRILGQSFNWLSFEGVTGVSIIGGALDAKGTALWACKLAGRTDCPNGGATSLSFTNSKNINFN GLMSLNSQMFHIARIKGVKVNAAGNSPNTDGIHVQLSRNVAIFNTSIKTGDNCVSIGPGRKDLWIEQITCGPGHDISCSGYSKWFEDWARPSNGFVQGVQ FLDVVMINVQNPIVIDQNYCPHNINCPAQVSGVKVSDVICRNIQGLSATIVAINFDCSATNPCSGIRLENVSLTCRNQELQSHCANAIG |
Full Sequence |
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Protein Sequence Length: 308 Download |
MYGLQHVPEG RYLLRNAIVF KGDNCKSTDI TFRIDGTLIA SSDYRILGQS FNWLSFEGVT 60 GVSIIGGALD AKGTALWACK LAGRTDCPNG GATSLSFTNS KNINFNGLMS LNSQMFHIAR 120 IKGVKVNAAG NSPNTDGIHV QLSRNVAIFN TSIKTGDNCV SIGPGRKDLW IEQITCGPGH 180 DISCSGYSKW FEDWARPSNG FVQGVQFLDV VMINVQNPIV IDQNYCPHNI NCPAQVSGVK 240 VSDVICRNIQ GLSATIVAIN FDCSATNPCS GIRLENVSLT CRNQELQSHC ANAIGKIVGT 300 VQPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-49 | 7 | 303 | 335 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-51 | 7 | 281 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-51 | 7 | 307 | 338 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-57 | 7 | 306 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-84 | 7 | 307 | 333 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 7 | 307 | 59 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 7 | 307 | 69 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 6 | 307 | 66 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 6 | 307 | 68 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 4 | 307 | 57 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000004 | 95 | 281 | 154 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0007 | 59 | 279 | 76 | 288 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0007 | 59 | 279 | 76 | 288 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0007 | 59 | 279 | 76 | 288 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.005 | 66 | 292 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 301 | 38 | 307 | 0 |
JZ194028 | 290 | 32 | 290 | 0 |
DY281549 | 281 | 6 | 255 | 0 |
JG632385 | 267 | 30 | 265 | 0 |
JZ192621 | 271 | 25 | 264 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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