Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018224m |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 50677.9 Isoelectric Point: 7.0267 |
Chromosome | Chromosome/Scaffold: 2 Start: 18521989 End: 18524322 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 428 | 0 |
YASEGGAQLFVPAGKWLTGSFNLISHFTLYLHKDAVLLASQDMNEWPVLKPLPSYGRGRDAAAGRFSSLIFGTNLTDVIVTGDNGTIDGQGEFWWQQFHK KKLKYTRPYLIEIMFSTDIQISNLTLLDSPSWNVHPVYSSNILVQGITIIAPITSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGRPT KQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIVAIHTESGIRIKTAVGRGGYVKDIYVRRMTMHTMKWVFKMNGDYGSHADDKYDKNAIPEIKGIN YRDMVADNVTIAARLEGIADHPFTGICISNVTIGLAAKAKKQPWTCTNIEG |
Full Sequence |
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Protein Sequence Length: 463 Download |
MELLGRRTQV IKLFLVLVVV GLLKGAESRK TMKFESLEYT AISCRAHSAS LTEFGGVGDG 60 KTSNTKAFQA AISQLSQYAS EGGAQLFVPA GKWLTGSFNL ISHFTLYLHK DAVLLASQDM 120 NEWPVLKPLP SYGRGRDAAA GRFSSLIFGT NLTDVIVTGD NGTIDGQGEF WWQQFHKKKL 180 KYTRPYLIEI MFSTDIQISN LTLLDSPSWN VHPVYSSNIL VQGITIIAPI TSPNTDGINP 240 DSCTNTRIED CYIVSGDDCV AVKSGWDEYG IAFGRPTKQL VIRRLTCISP YSATIALGSE 300 MSGGIQDVRA EDIVAIHTES GIRIKTAVGR GGYVKDIYVR RMTMHTMKWV FKMNGDYGSH 360 ADDKYDKNAI PEIKGINYRD MVADNVTIAA RLEGIADHPF TGICISNVTI GLAAKAKKQP 420 WTCTNIEGIT SGVTPRSCDL LPDQGHDKAT ACEFPADNLP IDL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-20 | 53 | 431 | 399 | + polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-27 | 36 | 435 | 414 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-28 | 153 | 426 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-29 | 48 | 439 | 411 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-57 | 49 | 344 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 26 | 462 | 40 | 476 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 13 | 462 | 4 | 461 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 26 | 462 | 28 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 23 | 463 | 17 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 462 | 1 | 458 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 47 | 410 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 47 | 410 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 47 | 410 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 47 | 410 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000001 | 65 | 384 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |