Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018308m |
Family | GH28 |
Protein Properties | Length: 377 Molecular Weight: 39918.3 Isoelectric Point: 7.7392 |
Chromosome | Chromosome/Scaffold: 7 Start: 6652345 End: 6653888 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 32 | 366 | 0 |
TAACASSDSTTIRVPQGRYLLRNAMVFKGDNCKSTDITFRIDGTLIASSNYRVLGQANNWLSFEGVTGVSIIGGALDAKGTSLWACKLAGSTDCPNGGAT SLSFTNSKNININGLMSLNSQMFHIVINGCQDVRIQGVKVNAAGNSPNTDGIHVQLSRNVAIFNTSIKTGDDCVSIGPGTKDLWIEQITCGPGHGISIGS LAKDLEEEGVQNVTVKNALFKGTQNGLRIKSWARPSNGFVQGVQFLDVVMFNVQNPIVIDQNYCPHNINCPAQVSGVKVSDVVYRNIQGTSATAIAIKFD CSSTNPCSGIRLENVSLTCRNQEVLSLCANANGKI |
Full Sequence |
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Protein Sequence Length: 377 Download |
MAESTLIFNV LSFGAKPNGV IDSTQAFLDV WTAACASSDS TTIRVPQGRY LLRNAMVFKG 60 DNCKSTDITF RIDGTLIASS NYRVLGQANN WLSFEGVTGV SIIGGALDAK GTSLWACKLA 120 GSTDCPNGGA TSLSFTNSKN ININGLMSLN SQMFHIVING CQDVRIQGVK VNAAGNSPNT 180 DGIHVQLSRN VAIFNTSIKT GDDCVSIGPG TKDLWIEQIT CGPGHGISIG SLAKDLEEEG 240 VQNVTVKNAL FKGTQNGLRI KSWARPSNGF VQGVQFLDVV MFNVQNPIVI DQNYCPHNIN 300 CPAQVSGVKV SDVVYRNIQG TSATAIAIKF DCSSTNPCSG IRLENVSLTC RNQEVLSLCA 360 NANGKIVGTV QPNNCL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 2.0e-80 | 35 | 362 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 4.0e-85 | 9 | 372 | 369 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 4.0e-90 | 4 | 376 | 379 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 5.0e-95 | 4 | 375 | 382 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 2.0e-133 | 4 | 376 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 7 | 376 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 2 | 376 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 4 | 376 | 26 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 376 | 25 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 8 | 376 | 23 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 133 | 350 | 154 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-16 | 9 | 365 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 5e-16 | 104 | 349 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-16 | 104 | 349 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-16 | 104 | 349 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 319 | 6 | 324 | 0 |
JZ191937 | 301 | 76 | 376 | 0 |
FC899369 | 299 | 6 | 304 | 0 |
DY287541 | 302 | 6 | 307 | 0 |
DY268186 | 316 | 6 | 321 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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