Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018519m |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43788.4 Isoelectric Point: 6.2191 |
Chromosome | Chromosome/Scaffold: 7 Start: 9886441 End: 9889211 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 389 | 0 |
GATEANDTGTPTLVVPAGKTFLLQPIKFSGPCKSNSVHVQILGKIVAPNTLLAWKECKEFWISFSEVTNLTINGTGEIDGNGKPWWSKARQLHHVVNNAI HFYKCDYLQLRGLKHLDSPKAHITINNCNNVSVSNLHIIAPEDSPNTDGIDISMSTFVNIRNSTIGTGDDCIALNNGSSHINITSIVCGPGHGISVGSLG EDGAYETAEEVHVRNCTFNGTKNGARIKTWQGGSGYVKGISFENITLIGAKNPIIIDQYYCDKNGHNCKPSASAVNVSNVIYRGFQGTYANEEEAIIFDC SNTPGCQNVTMNQINITSTLDPGKNISAACKNVNG |
Full Sequence |
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Protein Sequence Length: 406 Download |
MSKLLVCFLI FCNVALSNSI WYGQTTFNVL QFDAVGDGQT DDSEAFLKAW EALCGATEAN 60 DTGTPTLVVP AGKTFLLQPI KFSGPCKSNS VHVQILGKIV APNTLLAWKE CKEFWISFSE 120 VTNLTINGTG EIDGNGKPWW SKARQLHHVV NNAIHFYKCD YLQLRGLKHL DSPKAHITIN 180 NCNNVSVSNL HIIAPEDSPN TDGIDISMST FVNIRNSTIG TGDDCIALNN GSSHINITSI 240 VCGPGHGISV GSLGEDGAYE TAEEVHVRNC TFNGTKNGAR IKTWQGGSGY VKGISFENIT 300 LIGAKNPIII DQYYCDKNGH NCKPSASAVN VSNVIYRGFQ GTYANEEEAI IFDCSNTPGC 360 QNVTMNQINI TSTLDPGKNI SAACKNVNGT FDPAVPCSLW AYLHP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-89 | 66 | 387 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-94 | 25 | 388 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-100 | 27 | 384 | 366 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-119 | 20 | 396 | 379 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-136 | 4 | 389 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 26 | 397 | 29 | 395 | PGN [Glycine max] |
EMBL | CAA20037.1 | 0 | 20 | 389 | 8 | 356 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 4 | 389 | 9 | 376 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 397 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 396 | 1 | 387 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-24 | 67 | 387 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-24 | 67 | 387 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-24 | 67 | 387 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-24 | 67 | 387 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-24 | 67 | 387 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |