Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018682m |
Family | GH28 |
Protein Properties | Length: 372 Molecular Weight: 39416.8 Isoelectric Point: 7.9335 |
Chromosome | Chromosome/Scaffold: 7 Start: 5896091 End: 5897544 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 30 | 360 | 0 |
VACASSDSTTIRVPKGRYLLRNAMVFKGDNCKSTDITFRIDGTLIASSDYRVLGQANNWLSFEGVTGVSIIGGALDAKGTSLWACKLAGSTDCPNGGATS LSFTNSKNININGLMSLNSQMFHIVINGCQDVRIKGVKVNAAGNSPNTDGIHVQLSTNVAIFNTSIKTGDDCVSIGPGTKDLWIEQITCGPGHGISIGSL AKDLEEEGVQNVTVKNAIFKGTQNGLRIKSWARPSNGFVQGVQFLDVVMLNVQNPIVIDQNYCPHNINCPAQVSGVRVSDVVYRNIQGTSATVIAIKFDC SATNPCSGIRLENVSLTCRNHEVQSHCANAK |
Full Sequence |
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Protein Sequence Length: 372 Download |
STLIFNVLSF GAKPNGVIDS TQAFLDVWTV ACASSDSTTI RVPKGRYLLR NAMVFKGDNC 60 KSTDITFRID GTLIASSDYR VLGQANNWLS FEGVTGVSII GGALDAKGTS LWACKLAGST 120 DCPNGGATSL SFTNSKNINI NGLMSLNSQM FHIVINGCQD VRIKGVKVNA AGNSPNTDGI 180 HVQLSTNVAI FNTSIKTGDD CVSIGPGTKD LWIEQITCGP GHGISIGSLA KDLEEEGVQN 240 VTVKNAIFKG TQNGLRIKSW ARPSNGFVQG VQFLDVVMLN VQNPIVIDQN YCPHNINCPA 300 QVSGVRVSDV VYRNIQGTSA TVIAIKFDCS ATNPCSGIRL ENVSLTCRNH EVQSHCANAK 360 IVGTVQPNSC L* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 4.0e-80 | 32 | 347 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 3.0e-84 | 6 | 367 | 375 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 6.0e-87 | 1 | 371 | 379 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 2.0e-93 | 1 | 370 | 382 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 2.0e-132 | 1 | 371 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 4 | 371 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 1 | 371 | 28 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 1 | 371 | 26 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 4 | 371 | 31 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 5 | 371 | 23 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 130 | 347 | 154 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 101 | 358 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 101 | 358 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 101 | 358 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 101 | 358 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 319 | 3 | 321 | 0 |
FC899369 | 299 | 3 | 301 | 0 |
JZ191937 | 301 | 73 | 371 | 0 |
DY287541 | 302 | 3 | 304 | 0 |
DY268186 | 316 | 3 | 318 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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