Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa018901m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 42725.5 Isoelectric Point: 7.136 |
Chromosome | Chromosome/Scaffold: 3 Start: 10356205 End: 10358898 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 388 | 0 |
SASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILATQDESEWPLVPVLPSYGRGRDAPGGRFSSLIFGTNLTDIVITGNNGTIDGQGTSWWKKYKA GQLNETRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSNITIQGLTILAPIDSPNTDGIDPDSCSQTRIEDCFIVSGDDCIAVKSGWDQYGIKVGIPT EHLVIRRLTCISPDSATIALGSEMSGGIRDVRAEDITALSTQSSVRIKTAQGRGAYVKDIFVRRMTLKTMKYVFWMTGSYGSHPDPSFDPKALPLIQNIN YKQVEAENVTYSARLEGIPNDPFKGIC |
Full Sequence |
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Protein Sequence Length: 391 Download |
MQMVVREVGV ECRTPANWGT VKYSALSCRK HSALLTDFGA VGDGKTSNTK AFKAAIDHLS 60 QSASDGGAQL IVPPGKWLTG SFNLTSHFTL FLHKDAVILA TQDESEWPLV PVLPSYGRGR 120 DAPGGRFSSL IFGTNLTDIV ITGNNGTIDG QGTSWWKKYK AGQLNETRPY MIEIMYSNQI 180 QISNLTLVNS PSWFVHPIYS SNITIQGLTI LAPIDSPNTD GIDPDSCSQT RIEDCFIVSG 240 DDCIAVKSGW DQYGIKVGIP TEHLVIRRLT CISPDSATIA LGSEMSGGIR DVRAEDITAL 300 STQSSVRIKT AQGRGAYVKD IFVRRMTLKT MKYVFWMTGS YGSHPDPSFD PKALPLIQNI 360 NYKQVEAENV TYSARLEGIP NDPFKGICIS N |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-21 | 29 | 310 | 291 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-22 | 35 | 391 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-26 | 131 | 333 | 208 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-28 | 35 | 332 | 307 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-54 | 35 | 329 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 10 | 391 | 30 | 411 | unknown [Glycine max] |
RefSeq | XP_002299511.1 | 0 | 8 | 391 | 28 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 19 | 391 | 18 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 9 | 391 | 29 | 411 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 11 | 391 | 31 | 411 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 35 | 391 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 35 | 391 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 35 | 391 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 35 | 391 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000007 | 77 | 331 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC906391 | 300 | 23 | 322 | 0 |
DY294251 | 300 | 23 | 322 | 0 |
DY257045 | 316 | 76 | 391 | 0 |
EL471087 | 306 | 51 | 355 | 0 |
DY294251 | 47 | 322 | 368 | 0.000000000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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