Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa019055m |
Family | PL1 |
Protein Properties | Length: 444 Molecular Weight: 49640.8 Isoelectric Point: 8.4611 |
Chromosome | Chromosome/Scaffold: 1 Start: 26610913 End: 26612687 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 157 | 361 | 0 |
IQKGPLWITFARNMVIKLQQELMVASDKTIDGRGANVNIFDGAGITIQFVKNVIITNLHIKQIKAKEGGIIRDSVDHFGQRTKSDGDGISIFGSSNIWID HVSMENCTDGLIDAIMGSTGITISNCHFTKHNEVLLFGASNSYTQDKMMQITVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSMNPTIISQ GNRFI |
Full Sequence |
---|
Protein Sequence Length: 444 Download |
MAKLFNSYIL LFFFFLSFAA IIANAESDQP QQLDEYWKKR AEQAENYTME SYEPNPQRVT 60 DEFNAEVGEL IMGKNETRRN LKGQKKYVGP CKVTNPIDSC WRCDPNWANN RMKIVDCIQG 120 FGRKTTGGKG GPIYVVTDPS DGDLVNPRPG TLRHAVIQKG PLWITFARNM VIKLQQELMV 180 ASDKTIDGRG ANVNIFDGAG ITIQFVKNVI ITNLHIKQIK AKEGGIIRDS VDHFGQRTKS 240 DGDGISIFGS SNIWIDHVSM ENCTDGLIDA IMGSTGITIS NCHFTKHNEV LLFGASNSYT 300 QDKMMQITVA FNHFGKGLVQ RMPRCRHGFF HVVNNDYTHW LMYAIGGSMN PTIISQGNRF 360 IAGLNSATKE VTKREYTAEA EWKNWLWKSE GDLFMNGAFF VESGSPANLR ADKLDMIPFK 420 PGTYVTKMTK FAGALDCFVG KPC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 0.007 | 159 | 284 | 140 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
pfam04431 | Pec_lyase_N | 5.0e-14 | 33 | 81 | 50 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-27 | 177 | 360 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 175 | 360 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-73 | 169 | 363 | 206 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 32 | 443 | 30 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 32 | 443 | 59 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 14 | 443 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 443 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 443 | 3 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-22 | 125 | 362 | 21 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 9e-16 | 159 | 360 | 108 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000005 | 173 | 360 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |