Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa019563m |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41549.2 Isoelectric Point: 8.7449 |
Chromosome | Chromosome/Scaffold: 8 Start: 17409771 End: 17411493 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 41 | 376 | 0 |
WKEACQSTGRAHITIPKGTYIIGPLKFSGPCLNVSSLTIRGYLKATTDLRKYGFGGSWLEFGWMEGLTLTGGGTFDGRGARAWPHNKCPTDSNCKLLPTS LKFVAMNKTVIRGLTSVNSKFFHIALVECHNFKGSRLKISAPETSPNTDGIHIERSSSVYFSLSHIATGDDCISVGQGNSQITITSITCGPGHGISVGSL GKYPDERDVSGLVVKDCTMTGTTNGIRIKTWANSPGNSAATNMTFENIVMNNVTNPIIIDQLYCPFTSCTSKAPSRVKLSDIYFKNIRGTSSSEVAVALE CSKGIPCQNIYLEDVHLDLSSGEKQATSSCSNVKAK |
Full Sequence |
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Protein Sequence Length: 388 Download |
MKAEGRSLHH RAKNSAVFDV MSFGARADGR TDDSNAFMAA WKEACQSTGR AHITIPKGTY 60 IIGPLKFSGP CLNVSSLTIR GYLKATTDLR KYGFGGSWLE FGWMEGLTLT GGGTFDGRGA 120 RAWPHNKCPT DSNCKLLPTS LKFVAMNKTV IRGLTSVNSK FFHIALVECH NFKGSRLKIS 180 APETSPNTDG IHIERSSSVY FSLSHIATGD DCISVGQGNS QITITSITCG PGHGISVGSL 240 GKYPDERDVS GLVVKDCTMT GTTNGIRIKT WANSPGNSAA TNMTFENIVM NNVTNPIIID 300 QLYCPFTSCT SKAPSRVKLS DIYFKNIRGT SSSEVAVALE CSKGIPCQNI YLEDVHLDLS 360 SGEKQATSSC SNVKAKFSGT QIPPPCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-84 | 20 | 383 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 9.0e-87 | 15 | 386 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-92 | 11 | 386 | 387 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-103 | 45 | 378 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 3 | 387 | 385 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 36 | 386 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 11 | 386 | 46 | 387 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 15 | 386 | 30 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 11 | 386 | 46 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 1 | 386 | 24 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 109 | 357 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 51 | 373 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 51 | 373 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 51 | 373 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 51 | 373 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR944704 | 228 | 159 | 386 | 0 |
DR933566 | 209 | 149 | 357 | 0 |
FL808112 | 256 | 55 | 309 | 0 |
DT736437 | 255 | 18 | 271 | 0 |
DR938457 | 224 | 163 | 386 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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