Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa019727m |
Family | GH28 |
Protein Properties | Length: 383 Molecular Weight: 41134.5 Isoelectric Point: 8.3828 |
Chromosome | Chromosome/Scaffold: 6 Start: 13537619 End: 13539353 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 42 | 369 | 0 |
SSTQGTLTLVVPKGKRFLLNAVAFEGPCRAGKVNFQIQGSIVAPNNIGAWTNKEMWIHFSDVQGLTVNGGGRIDGNGAVWWKACGSKGCQRPTALHFNKC HGFQLSRLAIFNSPKNHISICSCNGPRVYGLLIWAPKDSPNTDGIDISRSTRVTIQSSHIATGDDCIAINSGSSYIKIRDIRCGPGHGISIGSLGEHGEY SQVEEVQVSNCSFKGTTNGVRIKTWEGGSGYARKITFEGITFEDTKNPIIIDQHYFDKRPTSAMDISKSVQVSDVTYRNIKGTCTDEKAITLACAGGGCT NIVMNNVSIKSDLPNKRSYAYCDNAHGT |
Full Sequence |
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Protein Sequence Length: 383 Download |
AFLEAWEAKT NTFNVVDYGA VGNGLVDDTK AFLKAWGAMC ASSTQGTLTL VVPKGKRFLL 60 NAVAFEGPCR AGKVNFQIQG SIVAPNNIGA WTNKEMWIHF SDVQGLTVNG GGRIDGNGAV 120 WWKACGSKGC QRPTALHFNK CHGFQLSRLA IFNSPKNHIS ICSCNGPRVY GLLIWAPKDS 180 PNTDGIDISR STRVTIQSSH IATGDDCIAI NSGSSYIKIR DIRCGPGHGI SIGSLGEHGE 240 YSQVEEVQVS NCSFKGTTNG VRIKTWEGGS GYARKITFEG ITFEDTKNPI IIDQHYFDKR 300 PTSAMDISKS VQVSDVTYRN IKGTCTDEKA ITLACAGGGC TNIVMNNVSI KSDLPNKRSY 360 AYCDNAHGTS SFSLPSVPCL SH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-89 | 8 | 366 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-92 | 1 | 367 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-103 | 13 | 381 | 377 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-109 | 13 | 371 | 362 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-110 | 10 | 381 | 377 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 12 | 382 | 29 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 11 | 380 | 21 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266960.1 | 0 | 7 | 380 | 14 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 12 | 381 | 26 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 8 | 381 | 23 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-27 | 98 | 350 | 63 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-27 | 98 | 350 | 63 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-27 | 98 | 350 | 63 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-27 | 98 | 350 | 63 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-27 | 98 | 350 | 63 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 254 | 46 | 299 | 0 |
CV536748 | 260 | 80 | 335 | 0 |
EX438627 | 275 | 7 | 274 | 0 |
CV538127 | 232 | 42 | 269 | 0 |
DY961682 | 267 | 8 | 266 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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