Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa020072m |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42031.8 Isoelectric Point: 9.6477 |
Chromosome | Chromosome/Scaffold: 7 Start: 22531678 End: 22533232 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
STSVRGAATVYVPRGSFLIKPVVFSGPCRSSRVTFQMDATGTSLVAPSNYWELGNSGTWILFIKVTGLSVYGGTVDARGHAYWQCRRYGKSCTAGARSVS LFWCNNVVVSGLRSMNSQTMHMAIDNCNNVVVKNVKIRAPSSSPNTDGIHIEASTGVTVSGSTIMTGDDCISIGSGSKNLWLERIACGPGHGISIGSLGD NANEDGVQNVTVTNCVFTKTQNGVRIKTWARASNGYATNIVFRNLIMKNVNNPIIIDQKYCPGNQGCPRQSSGVKISRVTYTNIRGTSASKVAMNFYCSS SNPCWGLKLQDIRLTYLNKAATSYCANAGG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MAPNIAVTLV LLIGLFERCS SATAAYNVVT FGARGDGNTD STKAFLRAWS AACSTSVRGA 60 ATVYVPRGSF LIKPVVFSGP CRSSRVTFQM DATGTSLVAP SNYWELGNSG TWILFIKVTG 120 LSVYGGTVDA RGHAYWQCRR YGKSCTAGAR SVSLFWCNNV VVSGLRSMNS QTMHMAIDNC 180 NNVVVKNVKI RAPSSSPNTD GIHIEASTGV TVSGSTIMTG DDCISIGSGS KNLWLERIAC 240 GPGHGISIGS LGDNANEDGV QNVTVTNCVF TKTQNGVRIK TWARASNGYA TNIVFRNLIM 300 KNVNNPIIID QKYCPGNQGC PRQSSGVKIS RVTYTNIRGT SASKVAMNFY CSSSNPCWGL 360 KLQDIRLTYL NKAATSYCAN AGGSSSGVVI PRSCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-89 | 12 | 392 | 388 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 8.0e-90 | 26 | 395 | 375 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-101 | 28 | 395 | 376 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-108 | 21 | 394 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-142 | 9 | 395 | 389 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 18 | 395 | 23 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 11 | 394 | 12 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331634.1 | 0 | 5 | 395 | 6 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 24 | 395 | 24 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 10 | 395 | 10 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-19 | 63 | 380 | 26 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-19 | 63 | 380 | 26 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-19 | 63 | 380 | 26 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-19 | 63 | 380 | 26 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-19 | 63 | 380 | 26 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |