Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa020086m |
Family | GH28 |
Protein Properties | Length: 518 Molecular Weight: 55988.8 Isoelectric Point: 8.8849 |
Chromosome | Chromosome/Scaffold: 2 Start: 25316671 End: 25321912 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 407 | 0 |
NASEGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILATQDESEWPLVPALPSYGRGRDAPGGRFSSFIFGTNLTDVVITGNNGTIDGQGASWWKKFKA GQLNETRPYMIEIMYSNQIQISNITLVNSPSWFVHPTYSSNITIHGLTILAPIDSPNTDGINPDSCSQTRIEDCFIVSGDDCIAVKSGWDQYGIKVGIPT EHLVIRRLTCISPDSATIALGSEMSGGIRDVRAEDITALSTQSSVRIKTAQGRGGYVKDIFVRRMTLKTMKYVFWMTGSYGSHPDPGFDPKALPLIQNIN YKQVEAENVTYSARLEGIPNDHFKGICISN |
Full Sequence |
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Protein Sequence Length: 518 Download |
MDGKSKMSNV SGAIFFILGL FFLRAAECRT PANGGTVKYS ALSCRKHSAL LTDFGAVGDG 60 KTSNTKAFKA AIHHLSQNAS EGGAQLIVPP GKWLTGSFNL TSHFTLFLHK DAVILATQDE 120 SEWPLVPALP SYGRGRDAPG GRFSSFIFGT NLTDVVITGN NGTIDGQGAS WWKKFKAGQL 180 NETRPYMIEI MYSNQIQISN ITLVNSPSWF VHPTYSSNIT IHGLTILAPI DSPNTDGINP 240 DSCSQTRIED CFIVSGDDCI AVKSGWDQYG IKVGIPTEHL VIRRLTCISP DSATIALGSE 300 MSGGIRDVRA EDITALSTQS SVRIKTAQGR GGYVKDIFVR RMTLKTMKYV FWMTGSYGSH 360 PDPGFDPKAL PLIQNINYKQ VEAENVTYSA RLEGIPNDHF KGICISNLSG AIFFILGLFF 420 LRAAECRTPA NWGTVKYSAL SCRKHSALLT DFGAVGDGKT SNTKAFKAAI HHLSQSASDG 480 GAQLIVPPGK WLTGSFNLTS HFTLFLHKDA VILATQV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5434 | PGU1 | 3.0e-9 | 449 | 515 | 67 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
pfam00295 | Glyco_hydro_28 | 1.0e-25 | 146 | 349 | 209 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-27 | 51 | 348 | 307 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-52 | 51 | 345 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 6 | 409 | 6 | 413 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 13 | 409 | 3 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 1e-36 | 411 | 516 | 3 | 101 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 14 | 407 | 18 | 411 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 3e-36 | 412 | 516 | 18 | 122 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 51 | 419 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_D | 0.0000003 | 449 | 506 | 30 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 51 | 419 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000003 | 449 | 506 | 30 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 51 | 419 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |