Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa021095m |
Family | GH28 |
Protein Properties | Length: 622 Molecular Weight: 65905.8 Isoelectric Point: 6.4356 |
Chromosome | Chromosome/Scaffold: 4 Start: 7217943 End: 7222248 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 392 | 0 |
NGMPTLVIPEMKAFLLQPIKFRGPCNSDGVHVQIMGKLVAPKMLDGWTECESDSDWLQFKDVGNLVVDGSGEIDGQGSSWWTTPNQYDRLSRKLMMNKQN CKAPDALHFHGCDNLKLSGLTHLNSARAHIAISGCNNVYVSHLTITAPEDSPNTDGIDISNSRNVFIQHSAIGTGDDCIAINGGCSDLNIANIACGPGHG ISVGSLGANGALETVQNVYVRDSSFSGTTNGARIKTWQGGSGYAKNITFEKITLDAAKNPIIIDQFYCNNDHNCKSQASALLVEDVKYIDFEGTSANEEA IKLDCDQNSGCRNIIMDRIKITSAVPDKKIYASCNNA |
Full Sequence |
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Protein Sequence Length: 622 Download |
MKKIFVLILI FWIGFGHGQR TFNVLDYGAT GDGKTDDSKA FLKAWGELCG AADEPNGMPT 60 LVIPEMKAFL LQPIKFRGPC NSDGVHVQIM GKLVAPKMLD GWTECESDSD WLQFKDVGNL 120 VVDGSGEIDG QGSSWWTTPN QYDRLSRKLM MNKQNCKAPD ALHFHGCDNL KLSGLTHLNS 180 ARAHIAISGC NNVYVSHLTI TAPEDSPNTD GIDISNSRNV FIQHSAIGTG DDCIAINGGC 240 SDLNIANIAC GPGHGISVGS LGANGALETV QNVYVRDSSF SGTTNGARIK TWQGGSGYAK 300 NITFEKITLD AAKNPIIIDQ FYCNNDHNCK SQASALLVED VKYIDFEGTS ANEEAIKLDC 360 DQNSGCRNII MDRIKITSAV PDKKIYASCN NAIGTSIGTI VPNVPCLKSG TEPTTSPPAM 420 PLPTLVMPPP SPPLPAAPPL VLILPVTPPP APPLPDTPPP LPATPHPSPL LPATPPQSLP 480 LPATSPQSPP LPATPPQSPP LPATPPQSPP LPATPPSSPP LPATPPPLQV MPPPLLNRPR 540 PTLPLPTTPP AVPLLTPLAP LVPTPPPPTP PPIPQMSFTG EPGVPDIYFT PGASSATKLH 600 KKHYIWCQLL IVYVLTRLLF G* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-89 | 16 | 406 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-102 | 21 | 402 | 384 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-106 | 19 | 411 | 395 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-112 | 1 | 416 | 422 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-122 | 3 | 396 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 21 | 407 | 29 | 396 | PGN [Glycine max] |
EMBL | CBI36307.1 | 0 | 23 | 409 | 33 | 404 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 23 | 409 | 21 | 376 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 407 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 407 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 124 | 322 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-20 | 115 | 324 | 68 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-20 | 115 | 324 | 68 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-20 | 115 | 324 | 68 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-20 | 115 | 324 | 68 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |