Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa021385m |
Family | GH28 |
Protein Properties | Length: 353 Molecular Weight: 38906.4 Isoelectric Point: 6.7699 |
Chromosome | Chromosome/Scaffold: 6 Start: 25832248 End: 25833957 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 33 | 279 | 3e-40 |
QIGRSSVVFLVPDKYSFLTQSSLFKGPCKSYLLFQLDGRIVAPSGPNKWSSRNSKSDWMDFYGIHGMTMQGGGLIDGRGEKWWNLPCTSALRFLKSSNLK VQGIGVQSSPKFHVCFDDCQNVRLEFISINSLGDSPKTDGIHIEDSNNVEIHHSRISPVPGIINYLNPLMQVIVVMIIGSLGRDESEACVKNITELWPKI TFNNIEMDKVKNPIITNQYYCLKDHYPNQTAALKIYDVSHAQHIQCS |
Full Sequence |
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Protein Sequence Length: 353 Download |
MPRSSAHGAF GAAGDSVTDD AQAFSKAWDA ACQIGRSSVV FLVPDKYSFL TQSSLFKGPC 60 KSYLLFQLDG RIVAPSGPNK WSSRNSKSDW MDFYGIHGMT MQGGGLIDGR GEKWWNLPCT 120 SALRFLKSSN LKVQGIGVQS SPKFHVCFDD CQNVRLEFIS INSLGDSPKT DGIHIEDSNN 180 VEIHHSRISP VPGIINYLNP LMQVIVVMII GSLGRDESEA CVKNITELWP KITFNNIEMD 240 KVKNPIITNQ YYCLKDHYPN QTAALKIYDV SHAQHIQCST APSSAAQGDG ELNLEPPFCW 300 KAYGIIETRV TRPLRSCLMG ELPKNNLFFN RILISGVEDA VTVNLVIGLD EI* 360 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 5.0e-37 | 10 | 253 | 287 | + polygalacturonase/glycoside hydrolase family protein |
PLN03003 | PLN03003 | 4.0e-40 | 10 | 281 | 312 | + Probable polygalacturonase At3g15720 |
PLN03010 | PLN03010 | 1.0e-41 | 10 | 257 | 280 | + polygalacturonase |
PLN02218 | PLN02218 | 5.0e-46 | 10 | 270 | 305 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 4.0e-57 | 8 | 313 | 369 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 9 | 327 | 93 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 9 | 327 | 74 | 449 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 9 | 320 | 74 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330008.1 | 0 | 9 | 324 | 26 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 9 | 323 | 79 | 459 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 0.0001 | 9 | 216 | 25 | 230 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.0005 | 93 | 189 | 113 | 220 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY668959 | 198 | 9 | 189 | 0 |
EY170913 | 193 | 9 | 184 | 0 |
DV135481 | 289 | 14 | 254 | 0 |
DW479564 | 309 | 12 | 272 | 0 |
FL769503 | 258 | 47 | 254 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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