Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa021427m |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 41317.7 Isoelectric Point: 7.8168 |
Chromosome | Chromosome/Scaffold: 7 Start: 21212639 End: 21214710 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 41 | 370 | 0 |
AACTSETENPTLIVPPKRFLLNPIVFSGPCRAKSINFLIFGRLLAPDSPGAWKELDPSQWLAFNGVSGLNIAGPGRINGRGKAWWDQSCRDHPRLAVKLV SCKNSSISEIHFLNSSQTHVLIRDCDGINIENVLIEAPERSPNTDGIHISASHNVVITNAIIGTGDDCVSIGDHTSNIVISYVKCGPGHGISIGSLGRSG NFVQVENIHVSKVYLQGTTNGARIKTWQVGRGYVRRVTFEHIFFGSVKNPIIIDQNYCNKSGACKEMETGVHITDVSFNQLYGTSSSRVAMNLNCSRSVA CTSIYLKSIYLRSALAGQNVTSNCTNAHGV |
Full Sequence |
---|
Protein Sequence Length: 384 Download |
SVSIACSTEH ANQTTFDVRD YGAVSGGHID DSEAFLKAWN AACTSETENP TLIVPPKRFL 60 LNPIVFSGPC RAKSINFLIF GRLLAPDSPG AWKELDPSQW LAFNGVSGLN IAGPGRINGR 120 GKAWWDQSCR DHPRLAVKLV SCKNSSISEI HFLNSSQTHV LIRDCDGINI ENVLIEAPER 180 SPNTDGIHIS ASHNVVITNA IIGTGDDCVS IGDHTSNIVI SYVKCGPGHG ISIGSLGRSG 240 NFVQVENIHV SKVYLQGTTN GARIKTWQVG RGYVRRVTFE HIFFGSVKNP IIIDQNYCNK 300 SGACKEMETG VHITDVSFNQ LYGTSSSRVA MNLNCSRSVA CTSIYLKSIY LRSALAGQNV 360 TSNCTNAHGV ASGVIQPDPC LQI* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-86 | 14 | 377 | 373 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 3.0e-93 | 12 | 372 | 362 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-93 | 11 | 380 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-96 | 16 | 383 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 2.0e-109 | 16 | 381 | 373 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 21 | 381 | 3 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
DDBJ | BAC57273.1 | 0 | 10 | 374 | 47 | 417 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 7 | 380 | 44 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 7 | 380 | 44 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002266960.1 | 0 | 14 | 381 | 18 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-26 | 111 | 353 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-17 | 107 | 372 | 72 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-17 | 107 | 372 | 72 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-17 | 107 | 372 | 72 | 338 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-16 | 101 | 327 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT769246 | 257 | 136 | 381 | 0 |
DT769247 | 247 | 17 | 253 | 0 |
DT746124 | 251 | 142 | 381 | 0 |
DT768232 | 246 | 147 | 381 | 0 |
DT768233 | 229 | 17 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|