Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa021953m |
Family | GH28 |
Protein Properties | Length: 377 Molecular Weight: 39457.7 Isoelectric Point: 8.1216 |
Chromosome | Chromosome/Scaffold: 4 Start: 22626056 End: 22627451 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 364 | 0 |
WAKACASAEPAVIYVPRGRFLLHNVVFAGPCKNNAITFRIAGTLVAPSDYRVIGNADNWISFEDVEGVTISGGILDGKGTDLWACKAAGKSCPSGATTLS FSNSNDIKVSGVISLNSQMFHIVINGCHNVKMQSVKVSASGQSPNTDGIHVQMSSSVTILNSKIATGDDCVSIGPGTSDLWIENIKCGPGHGISIGSLGK DQEEAGVQNVTVKSITFFNTQNGLRIKSWGRPSTGFAKDILFQHAVMLNVQNPIVIDQNYCPDNKGCPGQVSGVKISDVTYQDIHGTSATEVAVKFDCSS KYPCSNIKMKDVKLTYKNQAAEASCSHAAG |
Full Sequence |
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Protein Sequence Length: 377 Download |
MINSALAAKA PYNVASLGGK GDGKTESTKA FISAWAKACA SAEPAVIYVP RGRFLLHNVV 60 FAGPCKNNAI TFRIAGTLVA PSDYRVIGNA DNWISFEDVE GVTISGGILD GKGTDLWACK 120 AAGKSCPSGA TTLSFSNSND IKVSGVISLN SQMFHIVING CHNVKMQSVK VSASGQSPNT 180 DGIHVQMSSS VTILNSKIAT GDDCVSIGPG TSDLWIENIK CGPGHGISIG SLGKDQEEAG 240 VQNVTVKSIT FFNTQNGLRI KSWGRPSTGF AKDILFQHAV MLNVQNPIVI DQNYCPDNKG 300 CPGQVSGVKI SDVTYQDIHG TSATEVAVKF DCSSKYPCSN IKMKDVKLTY KNQAAEASCS 360 HAAGTSHGTV QPTSCL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 39 | 362 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 7.0e-92 | 2 | 372 | 381 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 4.0e-96 | 14 | 376 | 371 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 1.0e-102 | 12 | 375 | 372 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 2.0e-140 | 2 | 376 | 376 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 376 | 17 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | AAP21998.1 | 0 | 14 | 364 | 1 | 351 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 1 | 376 | 17 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 1 | 376 | 17 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 376 | 17 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-20 | 106 | 349 | 123 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-16 | 13 | 367 | 22 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.000000000000001 | 94 | 349 | 69 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.000000000000001 | 94 | 349 | 69 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.000000000000001 | 94 | 349 | 69 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 78 | 376 | 0 |
JZ194028 | 288 | 72 | 359 | 0 |
JZ192826 | 286 | 76 | 361 | 0 |
JZ193571 | 285 | 12 | 296 | 0 |
DY281549 | 323 | 4 | 325 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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