Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa022427m |
Family | GH28 |
Protein Properties | Length: 432 Molecular Weight: 46438.1 Isoelectric Point: 6.1031 |
Chromosome | Chromosome/Scaffold: 7 Start: 9864537 End: 9867161 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 418 | 0 |
KVACSSNDEAVLVVPEKIYHLKPIRFSGPCKSEVTVQILGTLKASDNRPDFSQDGRHWLVFDTVRNLLVEGGGVINGNGEQWWQNSCKINKSKPCKDAPT ALIFQKCKNLRVNNLNIQDAQQIHVSFQKCMNVQASNLSIIAPEKSPNTDGIHVTDTQNILITNSVIATGDDCLSIVNGCEKVQATNITCGPGHGISIGS LGSGNSKAYVSEITVTGAILSGTTNGVRIKTWQGGSGSASNITFENIEMHNVSNPIIIDQNYCDNRKKPCKEQRSAVQVENVVYKNISGTSASDVAIKFD CSKSFPCKGIVLQGINLQREGGKAAKASCNHVNV |
Full Sequence |
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Protein Sequence Length: 432 Download |
LQDIPLNKYV EEASQFGSQA YPSYFDMIDD GGNFSKDLIK QSSDVLSLKS FDKVDGTSAS 60 VNVNDFGAEG DGETDDTEAF AKAWKVACSS NDEAVLVVPE KIYHLKPIRF SGPCKSEVTV 120 QILGTLKASD NRPDFSQDGR HWLVFDTVRN LLVEGGGVIN GNGEQWWQNS CKINKSKPCK 180 DAPTALIFQK CKNLRVNNLN IQDAQQIHVS FQKCMNVQAS NLSIIAPEKS PNTDGIHVTD 240 TQNILITNSV IATGDDCLSI VNGCEKVQAT NITCGPGHGI SIGSLGSGNS KAYVSEITVT 300 GAILSGTTNG VRIKTWQGGS GSASNITFEN IEMHNVSNPI IIDQNYCDNR KKPCKEQRSA 360 VQVENVVYKN ISGTSASDVA IKFDCSKSFP CKGIVLQGIN LQREGGKAAK ASCNHVNVNS 420 IGDVSPLCHY S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-74 | 34 | 420 | 391 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-84 | 61 | 429 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-104 | 88 | 418 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-127 | 63 | 426 | 367 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-142 | 17 | 428 | 417 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 2 | 428 | 30 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 2 | 429 | 30 | 456 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 1 | 428 | 13 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 2 | 428 | 26 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 6 | 428 | 41 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 118 | 346 | 71 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-22 | 156 | 409 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 156 | 409 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 156 | 409 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 156 | 409 | 77 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH756941 | 254 | 175 | 428 | 0 |
EH767961 | 249 | 180 | 428 | 0 |
EE091344 | 237 | 166 | 402 | 0 |
EE093402 | 257 | 135 | 391 | 0 |
EH769878 | 253 | 95 | 347 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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