| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa023405m |
| Family | GH28 |
| Protein Properties | Length: 193 Molecular Weight: 21405.7 Isoelectric Point: 8.9396 |
| Chromosome | Chromosome/Scaffold: 6 Start: 25827305 End: 25829761 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 35 | 147 | 2.6e-33 |
| KACVTNITVSDSTIKNSDNGVRIKTWQGGSGSVSEVTFKDIHMDIVLNPIIIDQFYCLSKKCPNQTSALMINSVRFSNIKGTYDSRKPPMHLACSDSMPC KNLTLLGTDLVPA | |||
| Full Sequence |
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| Protein Sequence Length: 193 Download |
| MISQTLITTP PKFQQISSLE FKFHHPNATN ARNSKACVTN ITVSDSTIKN SDNGVRIKTW 60 QGGSGSVSEV TFKDIHMDIV LNPIIIDQFY CLSKKCPNQT SALMINSVRF SNIKGTYDSR 120 KPPMHLACSD SMPCKNLTLL GTDLVPAQGG AYLDPFCWKA FGPKDTFSTR QVPCLMKGYP 180 KMLQHDFDRS CF* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-20 | 38 | 144 | 110 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-21 | 38 | 162 | 127 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-27 | 33 | 150 | 118 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-32 | 32 | 145 | 114 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-38 | 33 | 162 | 131 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 32 | 191 | 325 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 32 | 191 | 297 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302793.1 | 0 | 32 | 187 | 298 | 454 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330008.1 | 0 | 32 | 182 | 258 | 408 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 32 | 188 | 378 | 535 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.000000000002 | 34 | 150 | 234 | 347 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000002 | 34 | 150 | 234 | 347 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.00000000003 | 38 | 148 | 212 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000003 | 38 | 148 | 212 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000003 | 38 | 148 | 212 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FG905405 | 158 | 33 | 189 | 0 |
| ES833865 | 157 | 32 | 188 | 0 |
| JZ010254 | 159 | 32 | 189 | 0 |
| EY173888 | 159 | 32 | 189 | 0 |
| EY170914 | 159 | 32 | 189 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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