| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa023418m |
| Family | GH28 |
| Protein Properties | Length: 276 Molecular Weight: 29225.9 Isoelectric Point: 4.4798 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2242451 End: 2243384 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 155 | 1.5e-22 |
| GGSGYARNITFEKITLDATKNPIIIDQFYCDRDHDCKSQPSALSVDYVKYIDFEGTSASEEAIKLDCDQNSGCHNIIMDCINITSAVLGKKIYASCNN | |||
| Full Sequence |
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| Protein Sequence Length: 276 Download |
| MDTWKGCDDW LQFLNVGNLL IDGSGENDGD DCIAINGGCS DLNIANIECG PGHGIRYGGS 60 GYARNITFEK ITLDATKNPI IIDQFYCDRD HDCKSQPSAL SVDYVKYIDF EGTSASEEAI 120 KLDCDQNSGC HNIIMDCINI TSAVLGKKIY ASCNNDIGTS LGTTMYLAST TPPSAPPLPV 180 TPPPSPPVLT TPPIALIFPP PPLPVTPPPA LPLSDKPPPP PSPPLSLSAS TSAIFTYAGN 240 YASTISSFTS SASNSTNVLH RGTRSGRYVL HIWSY* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 3.0e-23 | 29 | 146 | 155 | + Probable polygalacturonase At3g15720 |
| pfam00295 | Glyco_hydro_28 | 2.0e-24 | 18 | 155 | 173 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 8.0e-28 | 9 | 155 | 182 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 4.0e-28 | 21 | 162 | 177 | + Probable polygalacturonase |
| PLN03010 | PLN03010 | 2.0e-31 | 18 | 160 | 178 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD17250.1 | 8e-32 | 29 | 161 | 189 | 356 | polygalacturonase [Solanum lycopersicum] |
| RefSeq | NP_680757.1 | 2e-32 | 9 | 228 | 159 | 417 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 2e-38 | 18 | 167 | 208 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517618.1 | 2e-20 | 29 | 141 | 202 | 348 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 2e-30 | 29 | 179 | 541 | 727 | polygalacturonase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO013888 | 177 | 18 | 159 | 4e-28 |
| FN025824 | 181 | 9 | 155 | 3e-27 |
| CV536895 | 173 | 18 | 155 | 9e-27 |
| CA785641 | 150 | 29 | 143 | 2e-26 |
| DR923379 | 187 | 9 | 161 | 3e-26 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma09g36750.2.98.202 | Glyma09g36750.2.98.202 | |||
| Malus domestica | MDP0000207322 | MDP0000773314 | |||
| Prunus persica | ppa020246m | ppa021254m.200.301 | ppa021254m.200.301 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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