Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa023424m |
Family | CE8 |
Protein Properties | Length: 404 Molecular Weight: 44898.8 Isoelectric Point: 7.4003 |
Chromosome | Chromosome/Scaffold: 4 Start: 17662562 End: 17664560 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 104 | 396 | 0 |
IVVDKNGGGDSLTVQGAVDMVPEQNTDRVKIYILPGIYREKVLVPISKPYISFIGNQNQTSDTVITWNNKASDRDDTGSELGTYRTASVAIEADYFCATG ITFENSVVAVPGGYGMQAVALRIAGDKAMFFKVKVLGTQDTLLDETGSHYFYHSHIQGSVDFIFGRSRSLYQDCVLQSTATSSGAIAAHHRDSPYEDTGF SFMNCKIIGTGSILLGRAWGAYSRAVYSYCHFDDIITPSGWSDWNHPERQKTVEFGEYHCRGRGAAERRGRVPWLKSFSFEEIRPFLDTKFIY |
Full Sequence |
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Protein Sequence Length: 404 Download |
MILLVLLSTF EKSHKEHKRQ HPTLPHLLSS PLSLLLTSKT LRVHNNILGL SGFSLLVFLG 60 GVEVGFSQSG AYAKNYISWA DLKVDEQKEG LNSRNEFVNG SRVIVVDKNG GGDSLTVQGA 120 VDMVPEQNTD RVKIYILPGI YREKVLVPIS KPYISFIGNQ NQTSDTVITW NNKASDRDDT 180 GSELGTYRTA SVAIEADYFC ATGITFENSV VAVPGGYGMQ AVALRIAGDK AMFFKVKVLG 240 TQDTLLDETG SHYFYHSHIQ GSVDFIFGRS RSLYQDCVLQ STATSSGAIA AHHRDSPYED 300 TGFSFMNCKI IGTGSILLGR AWGAYSRAVY SYCHFDDIIT PSGWSDWNHP ERQKTVEFGE 360 YHCRGRGAAE RRGRVPWLKS FSFEEIRPFL DTKFIYGEQW LKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-91 | 102 | 401 | 303 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 1.0e-91 | 103 | 402 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-108 | 100 | 401 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-110 | 101 | 403 | 305 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 68 | 403 | 337 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 104 | 403 | 75 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 74 | 403 | 36 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 48 | 403 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 91 | 403 | 8 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 30 | 403 | 11 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.00386e-43 | 104 | 402 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-33 | 105 | 402 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-16 | 105 | 388 | 34 | 359 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000001 | 116 | 374 | 20 | 317 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000001 | 116 | 374 | 20 | 317 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GH171677 | 254 | 151 | 404 | 0 |
EL423097 | 239 | 76 | 304 | 0 |
EE163480 | 240 | 166 | 404 | 0 |
DR947352 | 218 | 68 | 283 | 0 |
EX321231 | 292 | 100 | 390 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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