Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa023489m |
Family | GH28 |
Protein Properties | Length: 437 Molecular Weight: 46943.1 Isoelectric Point: 7.7484 |
Chromosome | Chromosome/Scaffold: 7 Start: 7378918 End: 7381243 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 423 | 0 |
SSTQGTLTLVVPKGKRFLLNAVAFEGPCRASKVNFQIQGSIVAPNNIGAWTNKEMWIQFSKVQGLSVNGGGRIDGNGAVWWKACGGEGCQRPTALHFNKC HGFQLSRLAIFNSPKNHISICSCNGPRVFGLFIWAPKDSPNTDGIDISQSTRVTIQSSHIATGDDCIAINSGSSYIKIRDIKCGPGHGISIGSLGQHGEY SQVEEVQVSNCTFKGTTNGVRIKTWEGGSGYARKITFEGITFEDTKNPIIIDQHYFAKPTSAMDISKSVQVSDVTYRNINGTCADEKAISLACAGGGCTN IVMDNVTIKSDLPNKRSYAYCDNAHGT |
Full Sequence |
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Protein Sequence Length: 437 Download |
MKIPLTATIL VLIIWLIASP NRSCSARIVA PDDFDLFDYG AVHHNTQTDD EGFSKAFLEA 60 WEAKTNTFNV VDYGAVGNGL VDDTKAFLKA WGAMCASSTQ GTLTLVVPKG KRFLLNAVAF 120 EGPCRASKVN FQIQGSIVAP NNIGAWTNKE MWIQFSKVQG LSVNGGGRID GNGAVWWKAC 180 GGEGCQRPTA LHFNKCHGFQ LSRLAIFNSP KNHISICSCN GPRVFGLFIW APKDSPNTDG 240 IDISQSTRVT IQSSHIATGD DCIAINSGSS YIKIRDIKCG PGHGISIGSL GQHGEYSQVE 300 EVQVSNCTFK GTTNGVRIKT WEGGSGYARK ITFEGITFED TKNPIIIDQH YFAKPTSAMD 360 ISKSVQVSDV TYRNINGTCA DEKAISLACA GGGCTNIVMD NVTIKSDLPN KRSYAYCDNA 420 HGTSSFSVPS VPCLSH* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 7.0e-88 | 63 | 420 | 366 | + polygalacturonase/glycoside hydrolase family protein |
PLN02218 | PLN02218 | 7.0e-92 | 24 | 421 | 413 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-102 | 68 | 435 | 376 | + Probable polygalacturonase |
PLN03003 | PLN03003 | 2.0e-108 | 53 | 435 | 389 | + Probable polygalacturonase At3g15720 |
PLN03010 | PLN03010 | 7.0e-109 | 68 | 425 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 67 | 436 | 29 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 66 | 434 | 21 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266960.1 | 0 | 62 | 434 | 14 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 68 | 435 | 27 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 53 | 435 | 13 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-25 | 165 | 375 | 115 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-25 | 166 | 419 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-25 | 166 | 419 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-25 | 166 | 419 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-25 | 166 | 419 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |