Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa024649m |
Family | GH28 |
Protein Properties | Length: 438 Molecular Weight: 47595.4 Isoelectric Point: 6.3938 |
Chromosome | Chromosome/Scaffold: 10 Start: 354785 End: 356605 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 391 | 0 |
DTACQSESAARILVPRGFSFMIQSTIFTGPCLGGLVLQVDGTLVPPDGPESWPKNASRHQWLVFYRINEMSLQGGGVIDGRGEKWWNLPCKPHRGINGTT LPGPCYSPVAIKFFMSSNLTVQGLKIKNSPQFHFRFDNCRNVHIESISISAPARSPNTDGIHIENTNDVQIYNSVISNGDDCVSIGSGCYDVDIRNITCG PGHGISIGSLGNHNSRACVSNITVRDSIIKETDNGVRIKTWQGGSGSVSGVTFSNIHMDNVRNPIMINQFYCLNKGCTNQTSAVFVSDILYSNIRGTYDV RSSPMHFACSDALPCTNLTLSEVELL |
Full Sequence |
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Protein Sequence Length: 438 Download |
RRHNHKHKHT HPHISQPPSP PPDSASPPEE ATNPNNSSSG VFDVRSFGAV GDGQTDDTEA 60 FKMAWDTACQ SESAARILVP RGFSFMIQST IFTGPCLGGL VLQVDGTLVP PDGPESWPKN 120 ASRHQWLVFY RINEMSLQGG GVIDGRGEKW WNLPCKPHRG INGTTLPGPC YSPVAIKFFM 180 SSNLTVQGLK IKNSPQFHFR FDNCRNVHIE SISISAPARS PNTDGIHIEN TNDVQIYNSV 240 ISNGDDCVSI GSGCYDVDIR NITCGPGHGI SIGSLGNHNS RACVSNITVR DSIIKETDNG 300 VRIKTWQGGS GSVSGVTFSN IHMDNVRNPI MINQFYCLNK GCTNQTSAVF VSDILYSNIR 360 GTYDVRSSPM HFACSDALPC TNLTLSEVEL LPAVGDIVLD PYCWNAYGEL QTLTIPPVSC 420 LLEGVPRSLL DNDIEHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-80 | 37 | 421 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-88 | 37 | 417 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-89 | 69 | 390 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-100 | 44 | 390 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-122 | 37 | 417 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 37 | 437 | 84 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 37 | 437 | 65 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 10 | 437 | 40 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 37 | 437 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 35 | 437 | 135 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-27 | 100 | 390 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-27 | 100 | 390 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-27 | 100 | 390 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-27 | 100 | 390 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-27 | 100 | 390 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 322 | 49 | 370 | 0 |
DR450143 | 293 | 87 | 379 | 0 |
DY277859 | 362 | 33 | 391 | 0 |
CX663441 | 276 | 153 | 428 | 0 |
DV135481 | 289 | 51 | 338 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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