| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa025007m |
| Family | GH28 |
| Protein Properties | Length: 306 Molecular Weight: 32888.4 Isoelectric Point: 8.4677 |
| Chromosome | Chromosome/Scaffold: 1 Start: 39128238 End: 39131015 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 1 | 111 | 2.3e-33 |
| ALQLHNCPNLQLRGLTHVNSSKGHIGISYSQNVTLSHLNISAPESSPNTDGIDLYSATNVSIHQSTITTGHGISVGSLGAGGAYERVEEVFVGNCTFKGS MYGARIKTWQG | |||
| Full Sequence |
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| Protein Sequence Length: 306 Download |
| ALQLHNCPNL QLRGLTHVNS SKGHIGISYS QNVTLSHLNI SAPESSPNTD GIDLYSATNV 60 SIHQSTITTG HGISVGSLGA GGAYERVEEV FVGNCTFKGS MYGARIKTWQ GLPTVSFLFL 120 VIVSSSSFGI GYGQNDTYNV LDIGAFGDGG ATQVLNIPQG KTYLLKPLKF VGPCNANKVQ 180 IEVYIFRALV SQYWPCNYKV IYLNAAITSE QIRVTETKHP IIIGQNYVDD NRRVKVSDIT 240 FSGFERASTS QQATTLNCCS LGCTNIVMDH VKLSSMVPGK PLRSLCKNAN GTSISTSPHV 300 DCLSK* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 0.002 | 207 | 304 | 110 | + Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 6.0e-6 | 132 | 183 | 71 | + polygalacturonase |
| PLN03010 | PLN03010 | 6.0e-8 | 207 | 303 | 105 | + polygalacturonase |
| PLN03003 | PLN03003 | 6.0e-30 | 1 | 111 | 134 | + Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 2.0e-31 | 1 | 111 | 134 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 4e-32 | 1 | 303 | 145 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002324855.1 | 1e-31 | 1 | 111 | 150 | 283 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324855.1 | 0.000000005 | 112 | 183 | 1 | 93 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324855.1 | 8e-18 | 207 | 304 | 291 | 395 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0001 | 2 | 108 | 154 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EY474520 | 134 | 1 | 111 | 4e-25 |
| CV538127 | 134 | 1 | 111 | 1e-23 |
| CV536748 | 134 | 1 | 111 | 2e-23 |
| EY474520 | 101 | 207 | 304 | 0.00000002 |
| CV538127 | 33 | 151 | 183 | 2.5 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brachypodium distachyon | Bradi2g17920.1 | ||||
| Carica papaya | evm.TU.contig_35388.1 | ||||
| Oryza sativa | LOC_Os06g16810.1 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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