Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa025464m |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 40564.1 Isoelectric Point: 8.4816 |
Chromosome | Chromosome/Scaffold: 7 Start: 4202405 End: 4204086 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 37 | 370 | 0 |
WSAACASNDSTTISVPKGRYLLPSAIKFRGDKCKTLDITFQIDGTLIASSDYRILGQANNWLSFERVTGVSIVGGTLDAKGTALWACKLAASTGCPNGAT SLRFTNSKNISINGLTSLNSQMFHIVVNGCQDVYIRGVKVNAAGNSPNTDGIHVQLSRNVAIFNTSIKTGDDCVSIGPGMKDLWVEQISCGPGHGISIGS LAKDLEEEGVQNVTVRNAIFKGTQNGLRIKSWPRPSSGFVQGVQFIDAVMLNVQNPIVIDQKYCPRNINCPAQASGVKISDVLYRNIQGTSGRAVAIKFD CSATNPCSGIRLENVSLTYRNQVVQSHCTNVNGN |
Full Sequence |
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Protein Sequence Length: 382 Download |
MILQSLVVES AFIYNVLSFG AKPNGATDST QAFVDAWSAA CASNDSTTIS VPKGRYLLPS 60 AIKFRGDKCK TLDITFQIDG TLIASSDYRI LGQANNWLSF ERVTGVSIVG GTLDAKGTAL 120 WACKLAASTG CPNGATSLRF TNSKNISING LTSLNSQMFH IVVNGCQDVY IRGVKVNAAG 180 NSPNTDGIHV QLSRNVAIFN TSIKTGDDCV SIGPGMKDLW VEQISCGPGH GISIGSLAKD 240 LEEEGVQNVT VRNAIFKGTQ NGLRIKSWPR PSSGFVQGVQ FIDAVMLNVQ NPIVIDQKYC 300 PRNINCPAQA SGVKISDVLY RNIQGTSGRA VAIKFDCSAT NPCSGIRLEN VSLTYRNQVV 360 QSHCTNVNGN TSGIVQPNSC V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-87 | 15 | 377 | 371 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-87 | 41 | 367 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-91 | 13 | 380 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-99 | 10 | 380 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-133 | 8 | 381 | 375 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 13 | 381 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 13 | 381 | 31 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 1 | 381 | 18 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 13 | 381 | 31 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 1 | 381 | 7 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 138 | 354 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-18 | 15 | 353 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000006 | 71 | 367 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000006 | 71 | 367 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000006 | 71 | 367 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 314 | 14 | 327 | 0 |
JZ191937 | 300 | 82 | 381 | 0 |
FC899369 | 297 | 14 | 310 | 0 |
DY287541 | 299 | 14 | 312 | 0 |
DY268186 | 317 | 14 | 330 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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