Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa025559m |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42292.2 Isoelectric Point: 9.5129 |
Chromosome | Chromosome/Scaffold: 4 Start: 813856 End: 815254 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 105 | 305 | 0 |
LWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKGGNVRSTPTHVGHRRGCDGDAISIFASSHVWVDHCFLA RSSDGLIDVTHASTAVTITNNYFSQHDKVMLLGHNDNFSADKGMKVTIAFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAVGGSANPTIFSEGNYFI A |
Full Sequence |
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Protein Sequence Length: 386 Download |
MASLSPLILL SCFLTYYIAP TSQAYSPGYY TTTPKTTMNV VDSCWRSKSN WAINRRALAN 60 CAVGFGQDAV GGKYGSTYVV TTSYDDPINP KPGSLRYGVI QTQPLWIVFA KDMVITLKNE 120 LIMNSFKTID GRGAKVEIAY GPCITVQGVS HVIIHGISIH DCKPGKGGNV RSTPTHVGHR 180 RGCDGDAISI FASSHVWVDH CFLARSSDGL IDVTHASTAV TITNNYFSQH DKVMLLGHND 240 NFSADKGMKV TIAFNRFGAG LIERMPRVRF GYAHVANNRY DEWKMYAVGG SANPTIFSEG 300 NYFIAPETAY AKQVTKRESG GRWNNWKWRS SKDMFKNGAF FVQSGYGSCY PLYSKTQSFK 360 VLDGSMVPAL TSSAGPLRCF VGKAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-26 | 186 | 303 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-59 | 118 | 303 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-70 | 112 | 306 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 385 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 385 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 385 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 385 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 21 | 385 | 20 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 39 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 39 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-19 | 107 | 305 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 186 | 303 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.000000000000001 | 128 | 320 | 90 | 306 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |