Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa025787m |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 40981.9 Isoelectric Point: 9.3483 |
Chromosome | Chromosome/Scaffold: 4 Start: 22631190 End: 22632960 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 379 | 0 |
WAKACASVKPVVIYVPAGRFLLRNVVFSGPCKNNAITFRIAGTLVAPSNYGVIGNADNWIFFQHVNGVTISGGILDGQGTALWACKASGKSCPSGATTLG FSNSNNIKVSGLISLNSQMFHIVVNGCHNVKMDGVRVSASSNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK DQQEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSTGFARNILFQHAVMINVQNPIVIDQNYCPEKKGCPGQVSGVRISDVTYQDIHGSSATEVAVKFDCSS KYPCSKIRLENVKLTYKNQVAVATCSHAG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MANPRSLIVL SLAFVFMINS ALATAVTYNV ASLGAKANGK TDSTKAFLSA WAKACASVKP 60 VVIYVPAGRF LLRNVVFSGP CKNNAITFRI AGTLVAPSNY GVIGNADNWI FFQHVNGVTI 120 SGGILDGQGT ALWACKASGK SCPSGATTLG FSNSNNIKVS GLISLNSQMF HIVVNGCHNV 180 KMDGVRVSAS SNSPNTDGIH VQMSSGVTIL NSKIATGDDC VSIGPGTSNL WIENVACGPG 240 HGISIGSLGK DQQEAGVQNV TVKTVTFTGT QNGLRIKSWG RPSTGFARNI LFQHAVMINV 300 QNPIVIDQNY CPEKKGCPGQ VSGVRISDVT YQDIHGSSAT EVAVKFDCSS KYPCSKIRLE 360 NVKLTYKNQV AVATCSHAGG TAAGMVQPTS CL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 2.0e-92 | 55 | 366 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 5.0e-95 | 18 | 388 | 378 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 7.0e-97 | 30 | 392 | 371 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 2.0e-108 | 10 | 391 | 402 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 8.0e-139 | 5 | 392 | 391 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 392 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 1 | 392 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 1 | 392 | 1 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 392 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 1 | 392 | 1 | 393 | endopolygalacturonase [Prunus persica] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 63 | 365 | 57 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 3e-17 | 13 | 375 | 3 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-17 | 13 | 375 | 3 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 0.00000000000001 | 27 | 364 | 20 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.0000000000002 | 48 | 365 | 8 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |