y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa025917m |
Family | PL1 |
Protein Properties | Length: 245 Molecular Weight: 27442.4 Isoelectric Point: 10.3294 |
Chromosome | Chromosome/Scaffold: 5 Start: 18386768 End: 18387983 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 7 | 198 | 0 |
GKKWITFQRDMRIRLEKPLLISSFTAIDGRGPSVHIAGNACLVVFKASNIIIHGLRIHHCRSQAPSLVMGPDGKTMPLGQVDGDAIRLVTASKDGLLDVT RGSTDITVSNNWFRDQDKVMLLGHDDGYFRDKNMRVTVVYNHFGPNCNQRMPRIRYGYAHVVNNLYREWSQYAIGGGSMNPSVKSEANLFIA |
Full Sequence |
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Protein Sequence Length: 245 Download |
GATIIRGKKW ITFQRDMRIR LEKPLLISSF TAIDGRGPSV HIAGNACLVV FKASNIIIHG 60 LRIHHCRSQA PSLVMGPDGK TMPLGQVDGD AIRLVTASKD GLLDVTRGST DITVSNNWFR 120 DQDKVMLLGH DDGYFRDKNM RVTVVYNHFG PNCNQRMPRI RYGYAHVVNN LYREWSQYAI 180 GGGSMNPSVK SEANLFIAPK SRNNKEITWR KDSIGNKESW KFYSVGDIFE NRASFIRATP 240 PICS* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-20 | 27 | 196 | 186 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-48 | 29 | 196 | 188 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-54 | 16 | 200 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI26401.1 | 0 | 1 | 235 | 32 | 276 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267384.1 | 0 | 1 | 235 | 81 | 325 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
RefSeq | XP_002299118.1 | 0 | 1 | 238 | 63 | 312 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304865.1 | 0 | 1 | 238 | 63 | 310 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527354.1 | 0 | 1 | 200 | 91 | 301 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 10 | 238 | 69 | 312 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 10 | 238 | 69 | 312 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jta_A | 0.00000000002 | 100 | 196 | 184 | 287 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jrg_B | 0.00000000002 | 100 | 196 | 184 | 287 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1jrg_A | 0.00000000002 | 100 | 196 | 184 | 287 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FD757999 | 229 | 23 | 233 | 0 |
DT575750 | 187 | 61 | 235 | 0 |
GR935178 | 242 | 10 | 238 | 0 |
JK802766 | 242 | 10 | 238 | 0 |
CO108250 | 242 | 10 | 238 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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