| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa026186m |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 43202.4 Isoelectric Point: 7.9471 |
| Chromosome | Chromosome/Scaffold: 4 Start: 9573339 End: 9574928 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 51 | 385 | 0 |
| WTQACSERQNNRYVIPKGTYIVGPVDFAGPCKAKTIHFKVDGTVQSSKKQSVTGGAHPNAWISFTQVNNLFISGDGIFDGQGFEGNCTKAKQCEQPPLNL IFAMVKDSHIQGITSNNSVGGHIGIYRSINVTVDDVDIGIKGGEGILIEKSTNINIINTNIKILHDNCVTILDGNTGINIEKMTCSQGNGLGVSVLGNTG KEEPIKGVTVRNCTFSHTEGAIRIQSAAASNANIAISNLIFEDIIFDYLQNMAIILDQEHCPSKQCRTTNPSKVKVENVSFKNIKGTSVDPRIVILECGT APDACKDIRFIDLRVLVEGDDRLETQFRCKNVKPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MGSKFIHGIT WFLFLVAICA IKAKAISVDV VKFGAKGDGK TDDTKAFTQA WTQACSERQN 60 NRYVIPKGTY IVGPVDFAGP CKAKTIHFKV DGTVQSSKKQ SVTGGAHPNA WISFTQVNNL 120 FISGDGIFDG QGFEGNCTKA KQCEQPPLNL IFAMVKDSHI QGITSNNSVG GHIGIYRSIN 180 VTVDDVDIGI KGGEGILIEK STNINIINTN IKILHDNCVT ILDGNTGINI EKMTCSQGNG 240 LGVSVLGNTG KEEPIKGVTV RNCTFSHTEG AIRIQSAAAS NANIAISNLI FEDIIFDYLQ 300 NMAIILDQEH CPSKQCRTTN PSKVKVENVS FKNIKGTSVD PRIVILECGT APDACKDIRF 360 IDLRVLVEGD DRLETQFRCK NVKPAVAGHV DPAACNTRAV A* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-37 | 12 | 398 | 393 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 4.0e-39 | 29 | 383 | 361 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-39 | 27 | 348 | 333 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-42 | 30 | 395 | 375 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-61 | 11 | 395 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22050.1 | 0 | 26 | 384 | 26 | 383 | unnamed protein product [Vitis vinifera] |
| Swiss-Prot | Q39786 | 0 | 11 | 396 | 12 | 396 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002282563.1 | 0 | 26 | 395 | 26 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 26 | 396 | 26 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 26 | 396 | 26 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.00000002 | 112 | 387 | 70 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000002 | 112 | 387 | 70 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000002 | 112 | 387 | 70 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000002 | 112 | 387 | 70 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.00000002 | 112 | 387 | 70 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Signal Peptide | ||||
|---|---|---|---|---|
 | ||||
| Cleavage Site | ||||
| 25 | ||||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| BQ641047 | 191 | 212 | 402 | 0 |
| GW869811 | 194 | 77 | 270 | 0 |
| GW869811 | 90 | 1 | 90 | 0 |
| CO111136 | 267 | 11 | 268 | 2e-39 |
| CO124807 | 263 | 11 | 264 | 3e-39 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |