| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa026307m |
| Family | PL4 |
| Protein Properties | Length: 643 Molecular Weight: 73307.6 Isoelectric Point: 4.9069 |
| Chromosome | Chromosome/Scaffold: 1 Start: 45819660 End: 45824667 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 11 | 619 | 0 |
| QDRHVMMDNGIVQVTLSNPDGIVTGIRFNGIDNLLEIRNEEINRGYWDLVWSSASTGTTGIFDVIKGTSFRVIMESEEQVELSFTRAWDPSQQGKLVPLN IDKRFIMLRGSSGFYSYAIYEHLREWPGFELGETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPSRGQALAFPEAVLLVNPVEPEFKGEVDDKYQYSC DNKDNKVHGWICTEPPVGFWQITPSNEFRSGGPFKQNLTSHVGPTTLAMFLSAHYSGEDLVPKFAAGEQWKKVFGPVFMYANSAYEGDDPLSLWEDAKSQ MMMEVQCWPYSFPASEDFPKSHQRGSVSGRLLIRDRYISDDYIFAQGAYVGLAPQGDVGSWQRECKNYQFWTTADENGYFLIDGIRTGDYNLNATVPGFI GDYQYEVVLTITSGCEVEMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLFVDHPDRFRQYGLWERYSDLYPEKDLVYTVGVSDYSKDWFF AQVNRKKDDNKYQGTTWQIKFNLDTVDQSGPYKLRLAIASATLSELQVRVNDPKAYPPLFSSGMIGKDNSIARHGIHGLYWLFNVDIPSSRIIEGDNIIY LTQPRSTSP | |||
| Full Sequence |
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| Protein Sequence Length: 643 Download |
| MPPIGVKLLI QDRHVMMDNG IVQVTLSNPD GIVTGIRFNG IDNLLEIRNE EINRGYWDLV 60 WSSASTGTTG IFDVIKGTSF RVIMESEEQV ELSFTRAWDP SQQGKLVPLN IDKRFIMLRG 120 SSGFYSYAIY EHLREWPGFE LGETRIAFKL RKDKFHYMAM ADNRQRNMPL PDDRLPSRGQ 180 ALAFPEAVLL VNPVEPEFKG EVDDKYQYSC DNKDNKVHGW ICTEPPVGFW QITPSNEFRS 240 GGPFKQNLTS HVGPTTLAMF LSAHYSGEDL VPKFAAGEQW KKVFGPVFMY ANSAYEGDDP 300 LSLWEDAKSQ MMMEVQCWPY SFPASEDFPK SHQRGSVSGR LLIRDRYISD DYIFAQGAYV 360 GLAPQGDVGS WQRECKNYQF WTTADENGYF LIDGIRTGDY NLNATVPGFI GDYQYEVVLT 420 ITSGCEVEMG DLVYEPPRNG PTLWEIGIPD RSAAEFYVPD PNPKYINKLF VDHPDRFRQY 480 GLWERYSDLY PEKDLVYTVG VSDYSKDWFF AQVNRKKDDN KYQGTTWQIK FNLDTVDQSG 540 PYKLRLAIAS ATLSELQVRV NDPKAYPPLF SSGMIGKDNS IARHGIHGLY WLFNVDIPSS 600 RIIEGDNIIY LTQPRSTSPF QGIMYDYIRL EGPPSLSSKR ET* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.004 | 382 | 421 | 40 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 3.0e-29 | 333 | 432 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-55 | 444 | 631 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-75 | 11 | 303 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-102 | 1 | 202 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 1 | 639 | 1 | 650 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 17 | 639 | 1 | 621 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 17 | 632 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527352.1 | 0 | 5 | 633 | 5 | 631 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 1 | 635 | 1 | 635 | lyase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2fb2_B | 0.009 | 174 | 276 | 209 | 307 | A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT |
| PDB | 2fb2_A | 0.009 | 174 | 276 | 209 | 307 | A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479599 | 294 | 1 | 293 | 0 |
| DW479600 | 294 | 1 | 293 | 0 |
| DT552229 | 293 | 17 | 307 | 0 |
| DY293973 | 345 | 6 | 346 | 0 |
| GW864372 | 311 | 146 | 456 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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