| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa1027214m |
| Family | GH28 |
| Protein Properties | Length: 471 Molecular Weight: 51153.3 Isoelectric Point: 9.6481 |
| Chromosome | Chromosome/Scaffold: 1 Start: 25186881 End: 25189365 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 423 | 0 |
| EAACRVKGATVEIPSGFKFLIQPITLDGSGCMPDLVLQIDGTLLAPSKASTWPESSLFQWINFKYARNFTIQGTGIVDGQGSDWWNSSAHKRSKHTPDTK PTALRFYFSSDVTVRNIKIINSPQCHLKFDNSSWIKVNNITITSPDYSPNTDGIHLQNTQNVEIHHSTIGCGDDCVSIQTGCSNVHIHHVKCGPGHGISL GGLGKAGSVACVSNIIVNNILFQNTQSGVRIKTWPGGKGSVKNVSFSNIQVSNVGVPIVIDQNYCDNMKKHLCQNQIRGAVAISGVKFDNIIGNYSKEPI RLACSNDTPCTDVDLIDIRLKPTTGD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MKRSKNLSSL LFLFLIAFLT FLITSVEARK NHTKKSKPHK HHQGKGATSG NRTHNSHLPG 60 PAPAPPQPQQ STIFPVLSFG AKGDGVSDDS KALVAAWEAA CRVKGATVEI PSGFKFLIQP 120 ITLDGSGCMP DLVLQIDGTL LAPSKASTWP ESSLFQWINF KYARNFTIQG TGIVDGQGSD 180 WWNSSAHKRS KHTPDTKPTA LRFYFSSDVT VRNIKIINSP QCHLKFDNSS WIKVNNITIT 240 SPDYSPNTDG IHLQNTQNVE IHHSTIGCGD DCVSIQTGCS NVHIHHVKCG PGHGISLGGL 300 GKAGSVACVS NIIVNNILFQ NTQSGVRIKT WPGGKGSVKN VSFSNIQVSN VGVPIVIDQN 360 YCDNMKKHLC QNQIRGAVAI SGVKFDNIIG NYSKEPIRLA CSNDTPCTDV DLIDIRLKPT 420 TGDPRSLRSD LCRNSYGKSK APLLPSVIDY CLRRDGGQVK HIARSHEKMC * 480 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 1.0e-67 | 71 | 439 | 375 | + Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 4.0e-69 | 73 | 439 | 370 | + polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 8.0e-70 | 106 | 434 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 4.0e-76 | 72 | 445 | 379 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 4.0e-88 | 73 | 466 | 396 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189293.1 | 0 | 27 | 470 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 27 | 470 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312682.1 | 0 | 29 | 470 | 31 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315680.1 | 0 | 74 | 459 | 1 | 378 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527898.1 | 0 | 1 | 470 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-26 | 165 | 361 | 110 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-22 | 60 | 453 | 7 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 1e-18 | 173 | 361 | 79 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-18 | 173 | 361 | 79 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-18 | 173 | 361 | 79 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
