Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppb008505m |
Family | GH28 |
Protein Properties | Length: 259 Molecular Weight: 27785.5 Isoelectric Point: 4.7225 |
Chromosome | Chromosome/Scaffold: 1 Start: 25297492 End: 25298892 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 257 | 1.00053e-42 |
ACSTTQSVFLVPLGRQYLVNATKFQGPCKDNLVIQIDGTIVAPDEPNNWDPKFSRAWLDFSKLNGVLFQGHGVIDGSGSKWWASSCKKNKSNPCRGAPTA LTIDKSSAIKVKGLTIKNGQQMNFVISQCDSVRVNAVQVSAPGDSPNTDGIHITSSTNVVLQDCKIGTG |
Full Sequence |
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Protein Sequence Length: 259 Download |
MDKLLMVSLL GMLMAVYGVA GNMVYANIGI LNELESFDIE EDNEVNVFDI PSWTNERGCK 60 VLVNVDSFGA VGDGVSDDTQ AFQKAWDIAC STTQSVFLVP LGRQYLVNAT KFQGPCKDNL 120 VIQIDGTIVA PDEPNNWDPK FSRAWLDFSK LNGVLFQGHG VIDGSGSKWW ASSCKKNKSN 180 PCRGAPTALT IDKSSAIKVK GLTIKNGQQM NFVISQCDSV RVNAVQVSAP GDSPNTDGIH 240 ITSSTNVVLQ DCKIGTGS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-36 | 64 | 257 | 197 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-37 | 91 | 257 | 167 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 9.0e-40 | 63 | 257 | 197 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-55 | 63 | 257 | 198 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-63 | 51 | 257 | 208 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 257 | 16 | 261 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 257 | 1 | 257 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 257 | 1 | 228 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 257 | 1 | 258 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 257 | 1 | 257 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000006 | 63 | 257 | 28 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000006 | 63 | 257 | 28 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000006 | 63 | 257 | 28 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000006 | 63 | 257 | 28 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |