| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppb019654m |
| Family | GH28 |
| Protein Properties | Length: 283 Molecular Weight: 30802.9 Isoelectric Point: 8.6467 |
| Chromosome | Chromosome/Scaffold: 8 Start: 19207278 End: 19209679 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 90 | 187 | 2.8e-26 |
| KTISVANFGAKGNGADDTRPPCNEQAPTAVTFNKCNNLVVKNLKIQDAQQMHVRFQNCKNVEASHLTVTAPEDSPNTDGIHITNTKNITISSSVIGTG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 283 Download |
| MALQKHLVLF YVVVSFCAAS CYSSGFQEVN SLHSFVDHEK ESGYNSRAHP SNMNTIEGVK 60 FMEFIKPRAQ LFSSRKLERA AGSKSSSSVK TISVANFGAK GNGADDTRPP CNEQAPTAVT 120 FNKCNNLVVK NLKIQDAQQM HVRFQNCKNV EASHLTVTAP EDSPNTDGIH ITNTKNITIS 180 SSVIGTGVFV NGAKISGTSN GVRIKTWQGG SGSASNIVFQ NVEMNDVTNP IIIDQNYCDH 240 KNKDCTRQAL CFKIFNCKMQ EPNATMLNLR TKALSLLDVL GD* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-22 | 136 | 249 | 156 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-28 | 116 | 242 | 171 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-41 | 103 | 265 | 205 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-42 | 110 | 256 | 189 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-43 | 106 | 256 | 193 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX09642.1 | 0 | 108 | 265 | 71 | 270 | polygalacturonase [Malus x domestica] |
| DDBJ | BAC22688.1 | 7e-29 | 20 | 108 | 23 | 115 | polygalacturonase [Pyrus communis] |
| DDBJ | BAC22688.1 | 0 | 108 | 265 | 212 | 411 | polygalacturonase [Pyrus communis] |
| EMBL | CAA54448.1 | 0 | 1 | 108 | 1 | 107 | polygalacturonase [Prunus persica] |
| EMBL | CAA54448.1 | 0 | 108 | 265 | 204 | 403 | polygalacturonase [Prunus persica] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000005 | 104 | 237 | 139 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
 | |||||
| Start | End | ||||
| 7 | 26 | ||||
| Signal Peptide | |||||
|---|---|---|---|---|---|
 | |||||
| Cleavage Site | |||||
| 23 | |||||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| CO902992 | 193 | 115 | 265 | 0 |
| CN494417 | 163 | 108 | 228 | 8.40779e-45 |
| EE091344 | 198 | 110 | 265 | 8.00141e-43 |
| EE093402 | 193 | 110 | 260 | 1.99965e-42 |
| CO902992 | 28 | 251 | 278 | 5.8 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra014620 | ||||
| Glycine max | Glyma16g22488.1 | Glyma09g26905.1 | |||
| Populus trichocarpa | Potri.001G108000.1 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |