| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000940m |
| Family | GT30 |
| Protein Properties | Length: 451 Molecular Weight: 50206.9 Isoelectric Point: 9.8877 |
| Chromosome | Chromosome/Scaffold: 6 Start: 964833 End: 967458 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 39 | 218 | 0 |
| RWSERFGLPSAVRPPGSLIWFHAVSLGEGMAAIPVIRHCNELKPDLTILMTTTTVSAFEVIKNQLPIGVLHQFAPLDTPVAIDRFLAHWKPNAIIIMENE LWPNLIMAAAGLLIPLALLNARMSTKSFKRWSSPLVLPLISLLLSKFSLIAPLSTLQGIHFQLLHASPFVINYSGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 451 Download |
| MELGVIVYRL YRALTYGVSP LVHLHIRWRR LRGLEHCRRW SERFGLPSAV RPPGSLIWFH 60 AVSLGEGMAA IPVIRHCNEL KPDLTILMTT TTVSAFEVIK NQLPIGVLHQ FAPLDTPVAI 120 DRFLAHWKPN AIIIMENELW PNLIMAAAGL LIPLALLNAR MSTKSFKRWS SPLVLPLISL 180 LLSKFSLIAP LSTLQGIHFQ LLHASPFVIN YSGDLKYVVN KFHVSNGTSE SIRDLKVELS 240 EMKVWIASSL HKGEEEVILG VHNMLLKSHP DSVVIIVPRH PNHGQQIAHK LRKDGQSVAL 300 RSQNKKLMSR KTNIYVVDTL GELRELYNIA SIAVIGGSFI PGLTGHNLSE AAAAGCAVIT 360 GCHVGHFSHM VKAMQQSNPL SVTQLSTQLE LKEAVDLLLS NPEILETHQR ASKEVYESLS 420 SCIITNIWNL LNLHIFRGKL YVNVPSYLSK * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 2.0e-48 | 38 | 169 | 134 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 7.0e-99 | 9 | 416 | 410 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 8.0e-105 | 9 | 415 | 413 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB08602.1 | 0 | 1 | 439 | 1 | 432 | 3-deoxy-D-manno-octulosonic acid transferase-like protein [Arabidopsis thaliana] |
| EMBL | CAB82942.1 | 0 | 1 | 439 | 30 | 473 | 3-deoxy-D-manno-octulosonic acid transferase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_195997.2 | 0 | 1 | 439 | 1 | 439 | 3-deoxy-D-manno-octulosonic acid transferase-related [Arabidopsis thaliana] |
| RefSeq | XP_002322900.1 | 0 | 4 | 440 | 8 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 4 | 436 | 10 | 440 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 3e-28 | 42 | 431 | 28 | 371 | C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human Enterovirus 71 Particle (Cryo At 100k) |
| PDB | 2xcu_C | 3e-28 | 42 | 431 | 28 | 371 | C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human Enterovirus 71 Particle (Cryo At 100k) |
| PDB | 2xcu_B | 3e-28 | 42 | 431 | 28 | 371 | C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human Enterovirus 71 Particle (Cryo At 100k) |
| PDB | 2xcu_A | 3e-28 | 42 | 431 | 28 | 371 | C Chain C, Crystal Structure Of Formaldehyde Treated Empty Human Enterovirus 71 Particle (Cryo At 100k) |
| PDB | 2xci_D | 3e-28 | 42 | 431 | 28 | 371 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DK501546 | 268 | 1 | 268 | 0 |
| DY266328 | 364 | 4 | 367 | 0 |
| DK482427 | 252 | 1 | 252 | 0 |
| DY279419 | 390 | 27 | 414 | 0 |
| DY288817 | 356 | 4 | 359 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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