| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00007611m |
| Family | GT41 |
| Protein Properties | Length: 771 Molecular Weight: 85587 Isoelectric Point: 5.8892 |
| Chromosome | Chromosome/Scaffold: 045820 Start: 543 End: 5659 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT41 | 349 | 769 | 0 |
| IKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGIITLAIQAYERCLQIDPDSRNAGQNRLLAMNYIDEGSDDKLYEAHR EWGKCFMKLYPQDTSWDNSKIADRPLIIGYVSPDYFTHSVSYFIEAPLTHHDYTNCKVVVYSGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKKVASLV REDKVDILVELTGHTANNKLGTLACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPSSTKQKHVEELVRLPESFLCYTPSPEAGPVCPTPAISNGFITF GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGAVHAHNVGVSLLS | |||
| Full Sequence |
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| Protein Sequence Length: 771 Download |
| MGQPGMDSVQ GKESNGVAPD RNGGASPAKQ QLEGKEALRY ANILRSRNKF ADAIQLYNIV 60 LEKEGANVEA LIGKGICLQA QNLPRQAIEC FTEAVKIEPE NARALTHCGM IYKDEGHLVE 120 AAEAYQKART ADPSYKPASE FLAIVLTDLG TSLKLAGNTE EGIQKYCEAL EVDNHYAPAY 180 YNLGVVYSEM MQFDTALTCY EKAALERPLY AEAYCNMGVI YKNRGELEAA IACYERCLTI 240 SPNFEIAKNN MAIALTDLGT KVKIEGDIKQ GVAYYKKALF YNWHYADAMY NLGVAYGEML 300 NFEMANVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PNFSQSLNNL 360 GVVYTVQGKM DAAASMIEKA IIANPTYAEA YNNLGVLYRD AGIITLAIQA YERCLQIDPD 420 SRNAGQNRLL AMNYIDEGSD DKLYEAHREW GKCFMKLYPQ DTSWDNSKIA DRPLIIGYVS 480 PDYFTHSVSY FIEAPLTHHD YTNCKVVVYS GVVKADAKTL RFKDKVLKKG GLWRDIYGID 540 EKKVASLVRE DKVDILVELT GHTANNKLGT LACRPAPIQV TWIGYPNTTG LPTIDYRITD 600 SLADPSSTKQ KHVEELVRLP ESFLCYTPSP EAGPVCPTPA ISNGFITFGS FNNLAKITPK 660 VLQVWARILC AVPNSRLVVK CKPFCCDSIR QKFLSTLEEL GLESLRVDLL PLIHLNHDHM 720 QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGAVHA HNVGVSLLSK V 780 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 1.0e-15 | 287 | 386 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-17 | 254 | 352 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 2.0e-18 | 145 | 243 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 4.0e-21 | 321 | 420 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| COG3914 | Spy | 8.0e-69 | 303 | 768 | 513 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84033.1 | 0 | 6 | 771 | 1 | 791 | hypothetical protein OsI_30264 [Oryza sativa Indica Group] |
| GenBank | EEE69149.1 | 0 | 6 | 771 | 1 | 791 | hypothetical protein OsJ_28275 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062501.1 | 0 | 1 | 771 | 1 | 771 | Os08g0559300 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | O82422 | 0 | 6 | 771 | 1 | 771 | SPY_HORVU RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=HvSPY |
| RefSeq | XP_002445679.1 | 0 | 1 | 771 | 1 | 771 | hypothetical protein SORBIDRAFT_07g024110 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1w3b_B | 7e-37 | 71 | 395 | 37 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 7e-27 | 107 | 427 | 21 | 344 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 6e-21 | 75 | 332 | 142 | 385 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 1e-19 | 251 | 448 | 66 | 261 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 0.0000000005 | 68 | 258 | 203 | 386 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT041789 | 337 | 331 | 667 | 0 |
| GT041789 | 109 | 158 | 264 | 0.000000000003 |
| GT041789 | 125 | 222 | 344 | 0.0000008 |
| GT041789 | 107 | 267 | 371 | 0.00007 |
| GT041789 | 126 | 45 | 168 | 0.33 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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