Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010010m |
Family | AA7 |
Protein Properties | Length: 539 Molecular Weight: 58818.5 Isoelectric Point: 6.0603 |
Chromosome | Chromosome/Scaffold: 005053 Start: 941 End: 2785 |
Description | cytokinin oxidase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 62 | 258 | 9.6e-30 |
VEAIPNGVFHPTSPADIVALIRLSISQPKPFAVAARGQGHSARGQALAPGGIVIGMRSMGRGDHGHRVSMSPSSDQLWVDASGEQLWADVLRATLEHGLA PRVWTDYLHITVGGTLSNGGIGGQAFRHGPQIFNVHELDVVTGMGEMITCSPDKNSDLFFAALGGLGQFGVITRARIALEPAPKRVLWVRIAYTDAE |
Full Sequence |
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Protein Sequence Length: 539 Download |
MPRACLETFL MATSFLCTIN HFHMVASVSL ADDDIFNLDI VSKIHTDHDS ITKASSDFGH 60 IVEAIPNGVF HPTSPADIVA LIRLSISQPK PFAVAARGQG HSARGQALAP GGIVIGMRSM 120 GRGDHGHRVS MSPSSDQLWV DASGEQLWAD VLRATLEHGL APRVWTDYLH ITVGGTLSNG 180 GIGGQAFRHG PQIFNVHELD VVTGMGEMIT CSPDKNSDLF FAALGGLGQF GVITRARIAL 240 EPAPKRVLWV RIAYTDAESF TSDQELLISK PSSASGFDYI EGQVQLNRTL TEGRRSSSFF 300 SASELDQLAK LLLDTGSAAI YYIEGAMYYN DDTASSVNQK LERLLEELNF VPGFAFVRDV 360 SYVEFLDRVG REEQRLRAAG VWDVPHPWLN LFVPRSRILD FDAGVFKGIL RDAKPAGPVL 420 MYPMNRDRWD GRMTTATPDG GEDVFYAVGL LRSAVAAGDL ERLERENAAV LAFCDREGVG 480 CTQYLPHHAS RDGWRRHFGE KWGRLAALKR RYDPRGILSP GQGIFPAAGG DEAGSDSL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01678 | FAD_lactone_ox | 8.0e-7 | 56 | 243 | 188 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
pfam01565 | FAD_binding_4 | 9.0e-22 | 66 | 212 | 148 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 6.0e-27 | 39 | 524 | 498 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam09265 | Cytokin-bind | 8.0e-148 | 244 | 525 | 285 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 1 | 528 | 530 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD17196.1 | 0 | 17 | 525 | 5 | 516 | putative cytokinin dehydrogenase 1 precursor [Oryza sativa Japonica Group] |
DDBJ | BAD61835.1 | 0 | 1 | 524 | 2 | 529 | putative cytokinin oxidase [Oryza sativa Japonica Group] |
GenBank | EEC80843.1 | 0 | 41 | 524 | 1 | 487 | hypothetical protein OsI_23446 [Oryza sativa Indica Group] |
RefSeq | XP_002438603.1 | 0 | 1 | 537 | 1 | 547 | hypothetical protein SORBIDRAFT_10g022590 [Sorghum bicolor] |
RefSeq | XP_002453544.1 | 0 | 1 | 525 | 1 | 525 | hypothetical protein SORBIDRAFT_04g007730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3s1c_A | 0 | 38 | 525 | 23 | 515 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 3dq0_A | 0 | 38 | 525 | 23 | 515 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 3c0p_A | 0 | 38 | 525 | 23 | 515 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 3bw7_A | 0 | 38 | 525 | 23 | 515 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 2qkn_A | 0 | 38 | 525 | 23 | 515 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cytokinins degradation | RXN-4621 | EC-1.5.99 | isopentenyladenine:FAD oxidoreductase |
cytokinins degradation | RXN-4661 | EC-1.5.99 | trans-zeatin:FAD oxidoreductase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781924 | 522 | 12 | 526 | 0 |
ES837714 | 299 | 160 | 458 | 0 |
DY269838 | 336 | 66 | 390 | 0 |
EC873044 | 277 | 181 | 451 | 0 |
CO121610 | 279 | 172 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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