dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03365
Location and strand information: 152151 - 152780 (+)
Family: 9.B.28.1.5
Protein type: TC
Protein description: putative protein YesV

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03366
Location and strand information: 152777 - 154510 (+)
Family: 9.B.33.1.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03367
Location and strand information: 154510 - 155616 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: Regulator of RpoS

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03368
Location and strand information: 155719 - 157002 (+)
Family: SBP_bac_1
Protein type: STP
Protein description: Putative ABC transporter substrate-binding protein YesO

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03369
Location and strand information: 156999 - 157928 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Lactose transport system permease protein LacF

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03370
Location and strand information: 157932 - 158822 (+)
Family: 3.A.1.1.11
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03371
Location and strand information: 158838 - 159872 (+)
Family: GH105
Protein type: CAZyme
Protein description: Unsaturated rhamnogalacturonyl hydrolase YesR
Protein isoelectric point: 4.709
Protein molecular weight: 38614.86
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03372
Location and strand information: 159896 - 162181 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional regulator YesS

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03373
Location and strand information: 162198 - 162893 (+)
Family: CE12
Protein type: CAZyme
Protein description: Rhamnogalacturonan acetylesterase RhgT
Protein isoelectric point: 5.341
Protein molecular weight: 25857.06
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03374
Location and strand information: 162886 - 163548 (+)
Family: null
Protein type: null
Protein description: putative protein YesU

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03375
Location and strand information: 163545 - 164171 (+)
Family: 9.B.28.1.5
Protein type: TC
Protein description: putative protein YesV

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03376
Location and strand information: 164309 - 166153 (+)
Family: CBM2|CBM13|PL11_1|CE12|PL11|CBM35
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 6.0409
Protein molecular weight: 66602.32
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03377
Location and strand information: 166229 - 168037 (+)
Family: CBM2|CBM13|PL11_1|PL11|CBM35
Protein type: CAZyme
Protein description: Rhamnogalacturonan exolyase YesX
Protein isoelectric point: 5.1413
Protein molecular weight: 66432.73
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03378
Location and strand information: 168090 - 168743 (+)
Family: CE12
Protein type: CAZyme
Protein description: putative rhamnogalacturonan acetylesterase YesY
Protein isoelectric point: 5.5973
Protein molecular weight: 24480.69
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03379
Location and strand information: 168749 - 170743 (+)
Family: GH42
Protein type: CAZyme
Protein description: Beta-galactosidase YesZ
Protein isoelectric point: 6.182
Protein molecular weight: 74061.99
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03380
Location and strand information: 170788 - 173361 (+)
Family: PL26
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.3862
Protein molecular weight: 97415.4
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03381
Location and strand information: 173451 - 174992 (+)
Family: 3.A.1.1.10
Protein type: TC
Protein description: Lipoprotein LipO

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03382
Location and strand information: 175047 - 176003 (+)
Family: 3.A.1.1.10
Protein type: TC
Protein description: putative multiple-sugar transport system permease YteP

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03383
Location and strand information: 176017 - 176904 (+)
Family: 3.A.1.1.29
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000000012_4|CGC2
Gene ID: MGYG000000012_03384
Location and strand information: 176922 - 178253 (+)
Family: GH4
Protein type: CAZyme
Protein description: Alpha-galacturonidase
Protein isoelectric point: 5.7506
Protein molecular weight: 49064.87
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000000012_03371	GH105_e18
MGYG000000012_03373	CE12_e22
MGYG000000012_03376	PL11_e0\|CE12_e26\|CBM35_e56\|CBM2_e72\|CBM13_e93\|4.2.2.23	pectin
MGYG000000012_03377	PL11_e0\|CBM35_e56\|CBM2_e72\|CBM13_e93\|4.2.2.23	pectin
MGYG000000012_03378	CE12_e34
MGYG000000012_03379	GH42_e2
MGYG000000012_03380	PL26_e0
MGYG000000012_03384	GH4_e7

You are here: cgc-> ?help

CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000000012_03365	putative protein YesV	TC	152151	152780	+	9.B.28.1.5
MGYG000000012_03366	hypothetical protein	TC	152777	154510	+	9.B.33.1.1
MGYG000000012_03367	Regulator of RpoS	TF	154510	155616	+	HTH_AraC+HTH_AraC
MGYG000000012_03368	Putative ABC transporter substrate-binding protein YesO	STP	155719	157002	+	SBP_bac_1
MGYG000000012_03369	Lactose transport system permease protein LacF	TC	156999	157928	+	3.A.1.1.11
MGYG000000012_03370	L-arabinose transport system permease protein AraQ	TC	157932	158822	+	3.A.1.1.11
MGYG000000012_03371	Unsaturated rhamnogalacturonyl hydrolase YesR	CAZyme	158838	159872	+	GH105
MGYG000000012_03372	HTH-type transcriptional regulator YesS	TF	159896	162181	+	HTH_AraC+HTH_AraC
MGYG000000012_03373	Rhamnogalacturonan acetylesterase RhgT	CAZyme	162198	162893	+	CE12
MGYG000000012_03374	putative protein YesU	null	162886	163548	+	DUF1961
MGYG000000012_03375	putative protein YesV	TC	163545	164171	+	9.B.28.1.5
MGYG000000012_03376	Rhamnogalacturonan endolyase YesW	CAZyme	164309	166153	+	CBM2\| CBM13\| PL11_1\| CE12\| PL11\| CBM35
MGYG000000012_03377	Rhamnogalacturonan exolyase YesX	CAZyme	166229	168037	+	CBM2\| CBM13\| PL11_1\| PL11\| CBM35
MGYG000000012_03378	putative rhamnogalacturonan acetylesterase YesY	CAZyme	168090	168743	+	CE12
MGYG000000012_03379	Beta-galactosidase YesZ	CAZyme	168749	170743	+	GH42
MGYG000000012_03380	hypothetical protein	CAZyme	170788	173361	+	PL26
MGYG000000012_03381	Lipoprotein LipO	TC	173451	174992	+	3.A.1.1.10
MGYG000000012_03382	putative multiple-sugar transport system permease YteP	TC	175047	176003	+	3.A.1.1.10
MGYG000000012_03383	L-arabinose transport system permease protein AraQ	TC	176017	176904	+	3.A.1.1.29
MGYG000000012_03384	Alpha-galacturonidase	CAZyme	176922	178253	+	GH4
Protein ID	Protein Name	Type	Start	End	Strand	Signature