Statistics on HUMAN GUT
General Statistics
You are browserling the dbCAN-seq database: HUMAN GUT.
Currently the database contains:
Gene statistics
| Total number of genes |
10231988 |
Total number of CAZymes |
261386 |
CGC statistics.
| Total number of CGCs |
94276 |
| Number of annotated CGCs (with substrate) |
26912 |
| Number of CGCs annotated by dbCAN-PUL search (with substrate) |
26827 |
| Number of CGCs annotated by eCAMI sub-family (with substrate) |
3720 |
| Number of substrates |
35 |
| Number of phyla |
24 |
| Number of genomes |
4744 |
| Number of homologous PULs in dbCAN-PUL |
417 |
Genes in CGCs.
| Number of genes in CGCs |
522733 |
| Number of CAZymes in CGCs |
146039 |
Number of CAZymes in annotated CGGs (with substrate) |
66413 |
| Number of TCs in CGCs |
220728 |
Number of TCs in annotated CGGs (with substrate) |
85906 |
| Number of TFs in CGCs |
20225 |
Number of TFs in annotated CGGs (with substrate) |
11868 |
| Number of STPs in CGCs |
17689 |
Number of STPs in annotated CGGs (with substrate) |
7619 |
| Number of null genes in CGCs |
118052 |
Number of null in annotated CGGs (with substrate) |
44686 |
Gene statistics of annotated CGCs (with substrate).
| |
by dbCAN-PUL search |
by eCAMI sub-family |
| Number of CAZymes in CGCs |
65545 |
15089 |
| Number of TC in CGCs |
85143 |
11502 |
| Number of TF in CGCs |
11801 |
2752 |
| Number of STP in CGCs |
7555 |
968 |
| Number of null in CGCs |
44224 |
7347 |
MAG statistics.
| # of MAGs containing CAZyme |
4741 |
| # of MAGs containing CGC |
4688 |
| # of MAGs containing CGC annotated by dbCAN-PUL search |
3841 |
| # of MAGs containing CGC annotated by eCAMI sub-family |
1611 |
Distribution of CGCs according to substrate predicted by dbCAN-PUL search
Distribution of CGCs by substrate predicted by eCAMI sub-family
Counts of CGCs with the plotted PUL as the best hit from dbCAN-PUL
Counts of CGC-encoding MAGs in each phylum
