dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03205
Location and strand information: 146994 - 148964 (-)
Family: PL11_1
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 4.9144
Protein molecular weight: 72800.85
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03206
Location and strand information: 148990 - 149772 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03207
Location and strand information: 149809 - 151350 (-)
Family: null
Protein type: null
Protein description: SusD-like protein

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03208
Location and strand information: 151364 - 154513 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03209
Location and strand information: 154539 - 156572 (-)
Family: PL11_1
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 4.7611
Protein molecular weight: 74697.2
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03210
Location and strand information: 156596 - 158218 (-)
Family: null
Protein type: null
Protein description: Putative fimbrium tip subunit Fim1C

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03211
Location and strand information: 158245 - 159315 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03212
Location and strand information: 159713 - 162568 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.178
Protein molecular weight: 107056.96
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03213
Location and strand information: 162580 - 165126 (-)
Family: GH115
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.5543
Protein molecular weight: 97076.92
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03214
Location and strand information: 165142 - 166617 (-)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.3012
Protein molecular weight: 54079.28
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03215
Location and strand information: 166630 - 169626 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.3808
Protein molecular weight: 113422.86
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03216
Location and strand information: 169663 - 170901 (-)
Family: CE12
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.1085
Protein molecular weight: 46456.7
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03217
Location and strand information: 171163 - 172812 (+)
Family: CE12
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.8083
Protein molecular weight: 61635.14
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03218
Location and strand information: 173001 - 175523 (+)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.8433
Protein molecular weight: 95450.3
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03219
Location and strand information: 175531 - 178320 (+)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7304
Protein molecular weight: 104052.14
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03220
Location and strand information: 178317 - 180152 (+)
Family: PL11
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 5.7426
Protein molecular weight: 68138.06
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03221
Location and strand information: 180210 - 181730 (+)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.1547
Protein molecular weight: 56155.13
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03222
Location and strand information: 181862 - 183328 (+)
Family: null
Protein type: null
Protein description: L-Rhamnulokinase

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03223
Location and strand information: 183361 - 184614 (+)
Family: null
Protein type: null
Protein description: L-rhamnose isomerase

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03224
Location and strand information: 184705 - 185736 (+)
Family: 2.A.7.6.1
Protein type: TC
Protein description: L-rhamnose-proton symporter

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03225
Location and strand information: 185772 - 186581 (+)
Family: null
Protein type: null
Protein description: Rhamnulose-1-phosphate aldolase

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03226
Location and strand information: 186606 - 187751 (+)
Family: null
Protein type: null
Protein description: Lactaldehyde reductase

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03227
Location and strand information: 187770 - 189092 (+)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.9557
Protein molecular weight: 50349.87
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03228
Location and strand information: 189238 - 190164 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000000105_6|CGC4
Gene ID: MGYG000000105_03229
Location and strand information: 190439 - 193630 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000000105_03205
MGYG000000105_03209
MGYG000000105_03212	GH2_e89\|3.2.1.23	beta-galactan
MGYG000000105_03213	GH115_e4
MGYG000000105_03214	GH28_e26\|3.2.1.-	pectin
MGYG000000105_03215	GH2_e11\|3.2.1.31	beta-glucuronan
MGYG000000105_03216	CE12_e46
MGYG000000105_03217	CE12_e40
MGYG000000105_03218	GH105_e12
MGYG000000105_03219	GH106_e0\|3.2.1.174	pectin
MGYG000000105_03220	PL11_e1
MGYG000000105_03221	GH28_e61
MGYG000000105_03227	GH105_e39

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000000105_03205	Rhamnogalacturonan endolyase YesW	CAZyme	146994	148964	-	PL11_1
MGYG000000105_03206	hypothetical protein	null	148990	149772	-	No domain
MGYG000000105_03207	SusD-like protein	null	149809	151350	-	SusD-like_3\| SusD_RagB
MGYG000000105_03208	TonB-dependent receptor SusC	TC	151364	154513	-	1.B.14.6.1
MGYG000000105_03209	Rhamnogalacturonan endolyase YesW	CAZyme	154539	156572	-	PL11_1
MGYG000000105_03210	Putative fimbrium tip subunit Fim1C	null	156596	158218	-	Mfa_like_1
MGYG000000105_03211	hypothetical protein	null	158245	159315	-	Mfa_like_1
MGYG000000105_03212	Beta-galactosidase	CAZyme	159713	162568	-	GH2
MGYG000000105_03213	hypothetical protein	CAZyme	162580	165126	-	GH115
MGYG000000105_03214	hypothetical protein	CAZyme	165142	166617	-	GH28
MGYG000000105_03215	Beta-galactosidase	CAZyme	166630	169626	-	GH2
MGYG000000105_03216	hypothetical protein	CAZyme	169663	170901	-	CE12
MGYG000000105_03217	hypothetical protein	CAZyme	171163	172812	+	CE12
MGYG000000105_03218	hypothetical protein	CAZyme	173001	175523	+	GH105
MGYG000000105_03219	hypothetical protein	CAZyme	175531	178320	+	GH106
MGYG000000105_03220	Rhamnogalacturonan endolyase YesW	CAZyme	178317	180152	+	PL11
MGYG000000105_03221	hypothetical protein	CAZyme	180210	181730	+	GH28
MGYG000000105_03222	L-Rhamnulokinase	null	181862	183328	+	FGGY_N\| FGGY_C
MGYG000000105_03223	L-rhamnose isomerase	null	183361	184614	+	RhaA
MGYG000000105_03224	L-rhamnose-proton symporter	TC	184705	185736	+	2.A.7.6.1
MGYG000000105_03225	Rhamnulose-1-phosphate aldolase	null	185772	186581	+	Aldolase_II
MGYG000000105_03226	Lactaldehyde reductase	null	186606	187751	+	Fe-ADH
MGYG000000105_03227	hypothetical protein	CAZyme	187770	189092	+	GH105
MGYG000000105_03228	HTH-type transcriptional activator RhaS	TF	189238	190164	+	HTH_AraC+HTH_AraC
MGYG000000105_03229	TonB-dependent receptor SusC	TC	190439	193630	+	1.B.14.6.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature