dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03053
Location and strand information: 54891 - 56066 (+)
Family: 3.A.1.12.4
Protein type: TC
Protein description: Carnitine transport ATP-binding protein OpuCA

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03054
Location and strand information: 56070 - 56705 (+)
Family: 3.A.1.12.4
Protein type: TC
Protein description: Carnitine transport permease protein OpuCB

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03055
Location and strand information: 56705 - 57625 (+)
Family: 3.A.1.12.4
Protein type: TC
Protein description: Glycine betaine/carnitine/choline-binding protein OpuCC

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03056
Location and strand information: 57630 - 58292 (+)
Family: 3.A.1.12.4
Protein type: TC
Protein description: Carnitine transport permease protein OpuCD

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03057
Location and strand information: 58424 - 61255 (-)
Family: GH85|CBM32
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.3038
Protein molecular weight: 103191.61
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03058
Location and strand information: 61715 - 61978 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03059
Location and strand information: 62127 - 64067 (-)
Family: GH127
Protein type: CAZyme
Protein description: Non-reducing end beta-L-arabinofuranosidase
Protein isoelectric point: 4.662
Protein molecular weight: 73695.37
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03060
Location and strand information: 64118 - 65017 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000000323_13|CGC3
Gene ID: MGYG000000323_03061
Location and strand information: 65138 - 66400 (+)
Family: GH27|CBM51
Protein type: CAZyme
Protein description: Alpha-galactosidase A
Protein isoelectric point: 5.0644
Protein molecular weight: 47976.36
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000000323_03057	GH85_e0\|CBM32_e114\|3.2.1.96\|3.2.1.113\|3.2.1.-	hostglycan
MGYG000000323_03059	GH127_e0\|3.2.1.185	arabinogalactan
MGYG000000323_03061	GH27_e20\|CBM51_e6\|3.2.1.88	arabinogalactan

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is arabinogalactan

Substrate predicted by dbCAN-PUL is arabinan download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000000323_03053	Carnitine transport ATP-binding protein OpuCA	TC	54891	56066	+	3.A.1.12.4
MGYG000000323_03054	Carnitine transport permease protein OpuCB	TC	56070	56705	+	3.A.1.12.4
MGYG000000323_03055	Glycine betaine/carnitine/choline-binding protein OpuCC	TC	56705	57625	+	3.A.1.12.4
MGYG000000323_03056	Carnitine transport permease protein OpuCD	TC	57630	58292	+	3.A.1.12.4
MGYG000000323_03057	hypothetical protein	CAZyme	58424	61255	-	GH85\| CBM32
MGYG000000323_03058	hypothetical protein	null	61715	61978	-	PhdYeFM_antitox
MGYG000000323_03059	Non-reducing end beta-L-arabinofuranosidase	CAZyme	62127	64067	-	GH127
MGYG000000323_03060	HTH-type transcriptional activator RhaS	TF	64118	65017	-	HTH_AraC+HTH_AraC
MGYG000000323_03061	Alpha-galactosidase A	CAZyme	65138	66400	+	GH27\| CBM51
Protein ID	Protein Name	Type	Start	End	Strand	Signature